Array 1 180275-177929 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLWM010000005.1 Vagococcus fluvialis strain DIV0098 scaffold3.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 180274 36 100.0 30 .................................... TAAAAATGAAAAAGACAATATCTTGCAATT 180208 36 100.0 30 .................................... AGTTTGTAAGAATTTTTTCTTTTTCTTTCT 180142 36 100.0 30 .................................... TGCTGATGCACAATTAGAAGTCGAATTTGA 180076 36 100.0 30 .................................... AGGTATCATCAATCATATAATGCACCTAGC 180010 36 100.0 30 .................................... TACAAAAGAGGAGTATAGAGGCTTTCTTCT 179944 36 100.0 30 .................................... ATTGTATAAGTCAGAAAGTCCTAATGAGGT 179878 36 100.0 30 .................................... CAGGTGTTATTGAGAAAGCTTTCATAATAG 179812 36 100.0 30 .................................... AATATATGAGAAAGGACTAAAGATAGATGA 179746 36 100.0 30 .................................... CCAATTGGAATATTGTTGGTAAAGTTATTA 179680 36 100.0 30 .................................... TTGACTTACTAACCACTCTAATCCGTAAGC 179614 36 100.0 30 .................................... AGATAACTCTAAACGTGTCACACATTTGGA 179548 36 100.0 30 .................................... TGTAGATGCTGTTATTAATGCTATGTATGA 179482 36 100.0 30 .................................... GATTGAAGGTATTTTTGAGAAAGCAATGGG 179416 36 100.0 30 .................................... TATACGTGAATTAGAAACGTCATTGGAGAG 179350 36 100.0 30 .................................... TAACCATTCATTGCGTATGACCTAAAAGTA 179284 36 100.0 30 .................................... ACAAAAAACATTCTTACTTCTTATTTCGCT 179218 36 100.0 30 .................................... ATCAAATCAAAAGTTTCACCCTTTGACTTG 179152 36 100.0 30 .................................... GTAGAGCAGTAATTTTTAGCACAACTATTA 179086 36 100.0 30 .................................... ACTACTGAATAACACTAAGACTACCAATTA 179020 36 100.0 30 .................................... GTAGGTGTCATGCTGTTTCCTTTTGTTTGT 178954 36 100.0 30 .................................... CAAGGATATTGGTAGAGCTCGCGAGGTAGT 178888 36 100.0 30 .................................... TTAAATTGTTGTAAGTCGTTCCGTTGTATT 178822 36 100.0 30 .................................... TCTACAATATAGAGTGCATTCAGCTGACGT 178756 36 100.0 30 .................................... TAGATTAGATAGTGTTGAGCATGAAGAAAA 178690 36 100.0 30 .................................... CAGGTTTAAATCATGATGAGGTAAGAACAT 178624 36 100.0 30 .................................... ACAAACCTACACTGTTAAAACTCCAACTGG 178558 36 100.0 30 .................................... AAAATATCACGAAATTAGGAGGTTTGCAAG 178492 36 100.0 30 .................................... TAATAATTGGTTTTCAAAGTCAAAGTCAGC 178426 36 100.0 30 .................................... TCCAACTGGTCGTTTTAAACTAGATAGTTA 178360 36 100.0 30 .................................... AAATTTAGTAATGGTTGTTCTAGTTAGCGT 178294 36 100.0 30 .................................... GCTGAAACAGGGTTAAACGTGAATGTCATT 178228 36 100.0 30 .................................... GTCTTCATCGTCCGTTGAAGTTTTAGCTAC 178162 36 100.0 30 .................................... ACGCTAGAAACGCGTTGTTCATTGCTATAA 178096 36 100.0 30 .................................... GCAGTTAAATAAATATGACGTAATACCTTC 178030 36 100.0 30 .................................... TAGTAAGCACTATTTTGAGTTAAGAAAGCA 177964 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 36 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : TTGAGTTTAAAGATAACTGAAATAATGGCTCATGAAATTTTAGATCATGAATTAGACTTAGAACAAGATGAAATAACTATTTTAGAATTATTTAAAATATTAGGAATTCAAATTGAGACAAGAAGTGATACAATTTTTGAAAAAACAATTGAAATATTGCAAGTTTATAAGTTTCTTTCAAAGAAAAAAATTCTTGTTTTTTTCAATGTTTCTTTATACTTAACAAAAGAAGAAATTATCGAAATAAGTGAATTTATTTCTATGTTATACAAACCAGTTTTATTCATAGAAAGTCGCGAAATAGCTGGTGTTAAGCAGTTTGTTTTAGATGAAGATTATTTTTTAATGTCTGTAGATATGGTATAATTAAAGAAATAAGATAGAAAAATTGTTCTTTGAAAATAAAATTAAGTAATAAAAATGTGAAGTGTTCAAAGCTGAAATCTTGCTATAGATGAATAGTGCGATTACGAAATCTTGTGGAGAAAAAAAGCTACGAG # Right flank : CTTCGCAATTCCTGTTGCGTTGCGTTGTCTGTTTTAGAGCAATGTTGTTTTATCCATTGTAAAAATTGATTAAAAACAAATAGAAAACCAGTGAAATCACTATTCACTGGTTTTTTTGTTATTAGAAATATAGTAAACAGGAATACCGCAAAGAGTAATAAAAATACCTGTTAACGCTAGATAAGTTTGGGTCATTAAAGTTGTTCCTAAAATAAAAATGCCACCTAAAACAGCGATTATAGGAATAACTGGATATAAAGGAACTTTGTAAGGACGTTTTAAATTAGGTTCTCTTTTTCTTAGGATAAAAACAGCAACAAAAATTAATACGCTGAATAACCAAATAACAAAAATTAACATATCAGTTAATAAATCAAAACTACCTAAAAGCATCATAAAAATAGCAATTAATAATTGAAAGATAGCAGCGACATAAGGAACTTTTGTTTTAGTAGATAATTTTTTTAGATACTTACTTCCGATAATCAGATCTTCTTGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //