Array 1 252373-253684 **** Predicted by CRISPRDetect 2.4 *** >NC_007963.1 Chromohalobacter salexigens DSM 3043, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 252373 29 100.0 32 ............................. ACGGCAGCATGCGAGCCGCGCTCACCGTGTTC 252434 29 100.0 32 ............................. CCGGTATTCATGCCAGTGTGCGCAGACCCAAT 252495 29 100.0 32 ............................. GATCATGTCGGCCATGCGATCGCTGACGTCAT 252556 29 100.0 32 ............................. TCGACGTCGATCCAGCGTGCGAATGCCACGGC 252617 29 100.0 32 ............................. CCAGCTTGAATGAGCCATCCCACAGGCCGCTG 252678 29 100.0 32 ............................. GGAGGACAAAAATCACCACAAAAGGCCCATTG 252739 29 100.0 32 ............................. CCCAGGGGCGAATCATATGGCAGTATCGCAAC 252800 29 100.0 32 ............................. GCATTCACGATGATTGCGCAACACGATTTGCA 252861 29 100.0 32 ............................. TCCCCATGCTCGCATCACACCGTCTGCCCAGC 252922 29 96.6 32 ............................A CGTGCCACCAAGGTGCGTCGGGGCGACCTGTA 252983 29 100.0 32 ............................. CCGACCGAGCTTCTGGTCGAGGAAATGGCCGA 253044 29 96.6 32 .............A............... CAAGCGCGCCGCGACGAGGTGGCACTGATCGG 253105 29 89.7 32 ............CA.........G..... ATGACGGACCAGCTACGGGACGCCCGGGATAT 253166 29 96.6 32 .......................G..... ACGATGGCCAGGTCGGCCATCGCGTCTTCCAC 253227 29 86.2 31 ............CAT........G..... TCGACCAGCTTGGCGACGCCCGCCATAGCGC 253287 29 96.6 32 ............A................ AACGCCTGGGCGTCCATGTCGTCGATGTTGAC T [253289] 253349 29 93.1 32 .........A..A................ ACCCCACTGACCAGCGCACACCGCGCCGCCAT 253410 29 96.6 32 ..A.......................... TTGTCCAGGGTGCGCTGCTGGAAGCGACGCGG 253471 29 96.6 32 ........T.................... GCGCTGGCCACCAGCGAGGCCGGGGTGGCGCA 253532 29 100.0 32 ............................. ACGATCAGCGCGGCAACTATCAGAATGGCGGT 253593 29 93.1 32 .............AT.............. CCGACCCGGCCGCGTCCACCACATAACGACAA 253654 29 93.1 0 .............A...........T... | T,T [253676,253682] ========== ====== ====== ====== ============================= ================================ ================== 22 29 97.0 32 CCGTTCCCCGCAGGCGCGGGGATCAACCG # Left flank : GATGGGCTACACCCGCGATCAGGTGATCGGCGACATCCTCGACCAGTACGAACTGCACATGCAGTTCCTGCACCTCAACCGGATAGAGCCGGGCAACATCAACATGCCCGACAGCCCGGAACAGCCGCCTTCATAAGGCGTGCCCGGCCGGCCGCCACCGTCAGGCGGCCGGCCTTCTTGAGAAGCTTGAGCCCCCGGTCGCGATGCGGCCGTGGGTTTTTGCGTGGGAGGGGCGAGCAATACCCAATGCCGAGAATCGCCTGCAAGCAGCCTTCTTCAGAGAATGGTAATGTCATAGTCAGGCAAGAGGCTTTATCCGTCAGCGAATGAGTCAGCCGAGATGCACTGCAAACGGCGTTGGTGCGCTCTTTGCGGCTCTTCGCCAACTATTTGATTTATTTGGTTCTTTAACAAATTGCGCTGATCAAAAAATAGGCGACATCACTGGTGGAAAGATGTCGGCCGATTTTGTCCTTTAGAAACAAGCGTCTATGATTAGA # Right flank : GCTTTATGGTCTTCCAAGTAAAGGACGGCCTGGTCGGTGCGAACCCAATCAATGGGTTTCGTTACCGGTCCCCATCGAAGGAGCTGAGTATGTCGGCAGACAATGACGCGATTGCTTTTTATCACCGCTACGCGGGCAAGGCGATGCCGGGCCAGTCGGGAGACAGCTGCCACCTGTTGGCTTGGCACAGCCTTGATGTCGCGGCCGTCGGCTGGCATTTATTGGCCCCCGAGCGCCCACTGACGCAGCAGCTGGCGCTACGGCTTGGCATCGAGACGGAACCGCTGCGGCGACTGCTGGTATTTCTGCTCGGTTTGCATGATCTCGGCAAGTTCTCGCGTGCCTTTCAGGAAGTGCTGAAGTTGACACTCGAGGGTATGGCCAAGCCATTGGGTAAGCCTTATCTGGAGCGGCATGACCGTCTGGGTGTCTTGCTGTGGGATGCCTGGTGGCGCCAATGGCGTCGCGAGGGCGTGCTGCACTGGCCGCCCGATGATCAA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATCAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGTTCCCCGCAGGCGCGGGGATCAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 264668-266588 **** Predicted by CRISPRDetect 2.4 *** >NC_007963.1 Chromohalobacter salexigens DSM 3043, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 264668 29 100.0 32 ............................. TGTGGCGGCATCGGTTTCATGCGTACAAAAAA 264729 29 96.6 32 ............................T TCAGATCCGATTCATCGGTCTGGTCGATGTGG 264790 29 100.0 32 ............................. CCTGCTTAACGGGGTCGCCACCCGCGTGCTTT 264851 29 100.0 32 ............................. TCAGCCGCCTTGAACTTTCCTTCTGTGAGCCT 264912 29 100.0 32 ............................. GCGCCATTCCGCACCGCTTGGGATTCGCCGGC 264973 29 100.0 32 ............................. TGCGCCAGCTGCGCGGCGAACGTTCGCAAGAC 265034 29 100.0 32 ............................. ATGCCGATCACCCCGGCGAGCGCCATGCCCGC 265095 29 100.0 32 ............................. TGATCTCGGGGCCGCGCTTGCACAGGTAGTGC 265156 29 100.0 32 ............................. CTCGATAAGAATGGATGGCACATGGAGACGGC 265217 29 100.0 32 ............................. ATCGCGAGGTAGATGTCGCCCAGGCTGGAGAG 265278 29 100.0 32 ............................. CCTGGCGCAGCGGATAAGTGCAGGCCAGTTCA 265339 29 100.0 32 ............................. TCCGACATGTTCTTCAACTGGCTGGCGCACAC 265400 29 100.0 32 ............................. AGTTCTTCGTACACCTGTTCCTTGATGGCCTG 265461 29 100.0 32 ............................. ATTGGTCAGATCACACAGATTCTGACTAACAC 265522 29 100.0 32 ............................. CTCAGTTCCAAGGTGATTCGCGTTTCCAATGA 265583 29 100.0 32 ............................. CCAGCTCATCCGCGCCGTTATACCGGCGCGGG 265644 29 100.0 32 ............................. CGCGACGCCATGGCGATGGATAGCACGCCCTA 265705 29 100.0 32 ............................. CCGCAGTACGCGCGGCAGTCGGCGCTTACCTG 265766 29 100.0 32 ............................. CCAGCAGGTCATCGATGCCACGCTGCCGACGC 265827 29 100.0 32 ............................. AGCGACTGCATCCGGTAGCGCCCGAGCCAGGC 265888 29 100.0 33 ............................. GCGACCAAGGCAAGCCTGGCCGGCGAGCACCAG 265950 29 100.0 32 ............................. TTGGTGCCGGTGTGCAGCGAATGCCGTAGCGA 266011 29 100.0 32 ............................. CGTCGCCGAAATGGTCGCGGCACTGGACGTCG 266072 29 100.0 32 ............................. GCGAAGCCGTACTTCGTCATGCGCAAGGGCGA 266133 29 100.0 32 ............................. TTCCAGAACCTCGGCAGCGCCATCGTTGACGG 266194 29 96.6 32 ..............A.............. TTCGTGCTTAACAGCGGCGACCCGTTCATCGT 266255 29 93.1 32 ............T.T.............. ATCACTACCGTTTCCCGGAGAGCATCATGAAA 266316 29 93.1 32 ...........TT................ TTCACGTCGCAGTGGGGCGAGTACGACGACGG 266377 29 96.6 32 .....................G....... TCGGGCGAACGTCTGGCGCCGGGTTGGATACT 266438 29 100.0 32 ............................. TGCACGGCGGCGAGGCGCGGGCCTTTCGGAAT 266499 29 100.0 32 ............................. ATGAGGTGGTTGCCGGTGGCTGCTGCCTTCAT 266560 29 86.2 0 ......................CG...TA | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.8 32 CCGTTCCCCGCAGGCGCGGGGATCAACCG # Left flank : AAATCGAGCCTCCACCTCCGCCGCCGGATGCGGTCCCACCGGCGATCCCGGAGCCTGAATCCGTCGGCGATGCAGGGCATCGGAGTCAATGATATGGCAATGCTGGTGGTCGTTACCGAAGCCGTACCTCCCAGACTTAGAGGCCGTTTGGCTGTGTGGTTGCTGGAAATCCGAGCGGGGGTTTACGTCGGCGATGTCAGTAAACGCATTCGCGAAATGATCTGGGAACAGATCGAAGTCCTGGCCGAGGAAGGCGGCAACGTTGCCATGGCCTGGGCCAGCAATCACGAATCCGGCTTCGAGTTCCAAACTTATGGCGACAACCGTCGTGTCCCCATCGATCATGATGGATTGAGGCTGGTGCGGTTTTTACCACCTCAAGGTAATTGACTGATTTTAAAGGCTCTTTAATAATTTGGGGCGATTAAATTTTAAGCAAAATCGCTGGTGGAAATTTCCCTGGCGATTTTGTTCTTTATAAACAAGTGTCTATGATTAGA # Right flank : ACGCCGCTTTGTCAGCACTCCTGCCCTTGGGTGTTGCCTAACCAGCCTGCTGGGCGAGGTCGTCGATGAAGCGCTGCCGCCAGGTCAGCAGGCTGTTGCGGCGCAGGACGTCGATCATCTCCCGGTAGCGCTGGCGGCGTTCGTCGCGCGGCATGTTCAGGGCGCGTTCGATGGCGCTGGTGATATCGTGCACGTCGTAGGGGTTGACCAGCAGGGCGCCGCTCAGTTCGCGGGCGGCGCCGGCCAGGTCGCTGAGCACCAGCACGCCGGGGTCGTCGGGGTCCTGGGCAGCGACGAACTCCTTGCAGACCAGGTTCATGCCGTCGCGCAGCGGGGTCACCAGGCCCACCCTCGCGGCCCGGAACAGGCCCATCAGGTCGGCGTGGGCGTAGGTCTGGTTGAGGTAGTGCACCGGCAGCCAGTCGATGTCGGCGTAGGTGCCGTTGATATGCCCGGCCATGCCTTCGAGCTGGCGGCGTAGCTCGTCGTACTCGGGGATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATCAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGTTCCCCGCAGGCGCGGGGATCAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //