Array 1 17312-16486 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIHP01000030.1 [Ruminococcus] gnavus strain RJX1121 RJX1121_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 17311 32 100.0 33 ................................ CCTGATCCAGACCGATGAGGATCACCTGTCCAT 17246 32 100.0 35 ................................ CAAAGGAGTACGATACCCTGCAGTATTCAAACAGT 17179 32 100.0 34 ................................ TATGTGTTAATATAGAAAATGCAAGGAGGAAGCA 17113 32 100.0 34 ................................ CGGAAGATTTTGTTACGGTGTAAGTAGCGACTTT 17047 32 100.0 33 ................................ TACAACTGAAACAACTATAAAAAAACTTACAGA 16982 32 100.0 36 ................................ CCGTAATGCATCTACTGAAACTCCACAGGCATTGCA 16914 32 100.0 36 ................................ ACAAATTTAATTCGCTCGGATGTGGTGTCTACTTCA 16846 32 100.0 34 ................................ TCCTTTAACGCATAATAAAAGCACCCATCTCTGG 16780 32 100.0 34 ................................ CTTGGAAGTATCTTGTGACAATCGATACACTGTT 16714 32 100.0 34 ................................ CGTACAAACGGCAGGATTCGACCATCCTCCAGCT 16648 32 100.0 34 ................................ GCGATATCATCTGCCATGCTACTGCCGCCGGAAT 16582 32 100.0 33 ................................ CAGGCGGGACTTTCGGATAATTGGATCCATTAA 16517 31 90.6 0 ........................-.G.T... | T [16488] ========== ====== ====== ====== ================================ ==================================== ================== 13 32 99.3 34 GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT # Left flank : ATCCGGTATTTCTCTGGAAATGAGGCGAAAATGGGATGTTAGTGTTGATTACATATGATGTGAACACAGAAACAGCGGCTGGAAAGAGGAGATTGCGCCAAGTGGCAAAACAGTGTGTAAATTATGGGAGAAGAGTGCAAAATTCTGTATTCGAATGTATCTTAGATAATGCACAGTGTGTTATGCTTAAGGCAAAACTGACAGATATCATCGATGAAGAAGTTGATAGTTTGAGATTTTATTACTTGGGAAATCAATATAAAACAAAAGTCGAACATGTTGGTGTAGACAGAGGAATTTCGGCGGATGGAATTCTTATTATGTAACTGGGGTGCGGATGATAAGCAAACATAAAAATGCTGGGAGATTCGCACCAAAAAAATGCACAAAAATTAGTTGAAGAGGTGAAAGTTAGAGAAATATGATGAGGAAAAGAGAATGATATTGGTAGAATTGAGTAATATTAAAGAATATAAAGCCTAAAATTAGGCAAAATTGCT # Right flank : GTGGTGGACGGGCTGCCGGAAGATGCCGATGATTTCCGGTATCCGGGAGATGCGATCGAACCGGAAATACAATCGGAGTTGGAACGTGCATTAAGCGGGGAAACGGTATTGCCGGAGAAGATTCTGGATACAGACTGGGGAAATATTTTTATTGCTTATTATCCGTTGTATAATGAATCAGGAGAAGTCATCGGTGCACTTGGAATAGAAGTTGCGGCAGATATAGAAGCCGAGGCGGTACATGACAAATCCATTATACAGAGACATGGCAAATACTGATTTTATGACAGAACTAAAGAACAGAAATTCTTATGAGACAGACCGGCAGAACCTGGATGCAAAGAAGAAATGGAATGGCCTGACAGTGGCAGTGATCGATGTGAACAATCTGAAGCTGGTAAATGATCGGCTGGGGCATGCTGTGGGTGATGATTGTATTGTGAATGCAGCACGGGTCCTGCAGAGTGTTGAATCTCAAAAAGTTACGGCGTATCGATACG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //