Array 1 57610-58119 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_GL454222.1 Enterococcus faecalis TX0017 Scfld378, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                      	Spacer_Sequence              	Insertion/Deletion
==========	======	======	======	=====================================	=============================	==================
     57610	    37	  89.2	    29	NNN.................................C	AGCCATTTGCCCACATGCCACGTGCGGCA	
     57676	    37	 100.0	    29	.....................................	TCAAAAGCAGTTGTGAAGACACCTGAAGC	
     57742	    37	  89.2	     1	.................................NNNN	N                            	Deletion [57780]
     57780	    37	  86.5	    29	NNNNN................................	AATCAACTATCCAGTCGCACATGTCCGCA	
     57846	    37	 100.0	    29	.....................................	AAGCAGCCCATTATTGTTGCATTAGACAA	
     57912	    37	  97.3	    29	....................................T	AATGTTACAACTAGTTTGTTATTACCATC	
     57978	    37	  97.3	    29	....................................G	ACTGCTATCACGAGCGCTTTACATATATT	
     58044	    37	  86.5	     2	................................NNNNN	NN                           	Deletion [58083]
     58083	    37	  89.2	     0	NNN.................................C	|                            	
==========	======	======	======	=====================================	=============================	==================
         9	    37	  92.8	    22	GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA	                             	       

# Left flank :   AATATATTTTTTCAAATTAATGGTAAAGTTGTAACGATGGGGAAAGTAAATGCTGTATTAAATTCAGGAGAAGAACTATACGATGTTTCAGAGGATAGACGTTTTGCTGTGTTAGACATGGGGTTAGAAGATTTAATGAAAATAGAAGAAGTTTGTAAGGAATATAAAAAACCAATACCAACAGAATTTAAATTAATCTATAACGTTGAAACAACAAGCTTTAATACAAAGTATAAATATGACCTTCAATATTCCAATAACGATGCTTTAACTGATTATGATCTCTTTATGTCGTGGTATGAAGAAGTTAAGAAAGAGGTAGAAAATCCACCATTGTAATTTGGATTTTAATAAATTTTCATTTTTTCTATTTATTCGAACAAAAAAATGGCTCTTTGTCAAATAATGTTGGTAAAGAGAAAGTTTGGTATAATGAAAGAGTAGAAACGAATCAATACATTCTAAACTGAAATCTAGCTATGGATAAGTGATGNNNNNNN
# Right flank :  CCAAGTTGGTACGATTACTCAAAAATTAGAGTTTTATAGCCATGTTGTTAAAAAACAAACTATCACCACAAGCAATCCGTAATTTTTATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAA

# Questionable array : NO	 Score: 5.14
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-0.75, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA
# Alternate repeat :   NNNTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [6-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.27   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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