Array 1 102038-99730 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWI01000005.1 Pasteurella multocida strain HND07 Contig005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 102037 28 100.0 32 ............................ ATGACGACGAATTAAATCATCATCAGAAACAA 101977 28 100.0 32 ............................ TTGACTTCCACCTGATCTTCAATGAGCACTTG 101917 28 100.0 32 ............................ TTGTGTTCTTGTTGAGATAATAATATGCCTTC 101857 28 100.0 32 ............................ TGTAAGAACGTACCAACTCTTTCATATTTTTT 101797 28 100.0 32 ............................ AAGACAGGGACACGTAGTGTTGAATACGTATA 101737 28 100.0 32 ............................ TCTCTATTCTTAACTCCGCTATTTTTATCACG 101677 28 100.0 32 ............................ TTAATTCTATTAACTTTAGTTCATGCAAGTAG 101617 28 100.0 32 ............................ ATTAGCCTGCACGTTAACGTGACTAACTTTAT 101557 28 100.0 32 ............................ CGTTGCGATGTTGCCGAGCTCGAGTTTAGGTT 101497 28 100.0 32 ............................ ACCACTTATCGGGCGCGATTTTCTTCACGGAA 101437 28 100.0 32 ............................ GCATTTTTCAGCCACTCTTGCCATTCAGTATT 101377 28 100.0 32 ............................ AAGAACAACACCATATATCGCATGACTTATGC 101317 28 100.0 32 ............................ AAGTAATGTTTTCCGATCTTCTTCGGTAACTC 101257 28 100.0 32 ............................ AACTTCAATTCAGATGCCAACACCGCCATATT 101197 28 100.0 32 ............................ ACACCAGTCGATCCGGACAAAAACTTACTCAT 101137 28 100.0 32 ............................ CTTCCGATTTTTGATAGTCAAAGACTACTGAG 101077 28 100.0 32 ............................ ATCTTTTTCATACGTTACAATCTCAACACTTA 101017 28 100.0 32 ............................ TATGTTTAAAGTATCTGATATTTCGTCAGAAA 100957 28 100.0 32 ............................ GATATGTCAGAATGAGTACTGCCGGTATATCG 100897 28 100.0 32 ............................ ACAAAAAGAGGCTATCGTGGATAACGGTGCTG 100837 28 100.0 32 ............................ TTATAAAAATTCTCAAAATACAACTTGTAGAG 100777 28 100.0 32 ............................ ACTGCTGACTAACTGCTCAGCTATTGTTTCAA 100717 28 100.0 32 ............................ TTTTTGAAGTGCTCAACAATAACGCTGCTGAC 100657 28 100.0 32 ............................ ATTGAGTCAAAAGCCGACATTAAAGCCTTAAT 100597 28 100.0 32 ............................ TTTTAATCGTTCCACGGTTGAAGTTAAACCTT 100537 28 100.0 32 ............................ AAAATCCTGTTCTATTGCTAGCCAATCAATGT 100477 28 100.0 32 ............................ AAGGTCTGCTAAACCTGCGGCAGCGGAATAAC 100417 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 100357 28 100.0 32 ............................ ATCTCACGAATGTGAAACCCGCCCACATCTTC 100297 28 100.0 32 ............................ TTTTAATCGTTCCACGGTTGAAGTTAAACCTT 100237 28 100.0 32 ............................ AAAATCCTGTTCTATTGCTAGCCAATCAATGT 100177 28 100.0 32 ............................ AAGGTCTGCTAAACCTGCGGCAGCGGAATAAC 100117 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 100057 28 100.0 32 ............................ ATCTCACGAATGTGAAACCCGCCCACATCTTC 99997 28 100.0 32 ............................ AAACTGTCTAAGACTGCCGTAAAATTTAACGT 99937 28 100.0 32 ............................ ATCACCATCATAAGCATCAACATCGTTAATGA 99877 28 100.0 32 ............................ ACGCTTGGATCTGCAACCACTTGTCGCGGGCG 99817 28 100.0 32 ............................ ACCAAAGAGCGGTGTTTTGGCTTTTTGAGCTG 99757 28 78.6 0 ....................TG.CA.TT | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : GACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15753-16140 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWI01000006.1 Pasteurella multocida strain HND07 Contig006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15753 28 100.0 32 ............................ TCGTTACCTGCGGGCGTTCGAATACAGCGGGA 15813 28 100.0 32 ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 15873 28 100.0 32 ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 15933 28 100.0 32 ............................ TTTAATTTTTAAAAAAGCGGTCACGCCGGAAG 15993 28 100.0 32 ............................ TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA 16053 28 96.4 32 ..............G............. ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 16113 28 89.3 0 ......T...........A.....A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : TCAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGAGGGCGTCATGGTGGGGGTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGTACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //