Array 1 95863-94737 **** Predicted by CRISPRDetect 2.4 *** >NZ_QONE01000034.1 Escherichia coli strain SC354 NODE_11_length_157116_cov_132.889_ID_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95862 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 95801 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 95740 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 95679 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 95618 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 95557 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 95496 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 95435 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95374 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95313 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95252 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 95191 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 95130 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 95069 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 95008 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 94947 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 94887 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 94826 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94765 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113162-111364 **** Predicted by CRISPRDetect 2.4 *** >NZ_QONE01000034.1 Escherichia coli strain SC354 NODE_11_length_157116_cov_132.889_ID_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113161 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 113100 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 113039 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 112978 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 112917 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 112856 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 112795 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 112734 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 112673 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 112612 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 112551 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 112490 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 112429 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 112368 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 112307 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 112246 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 112185 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 112124 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 112063 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 112002 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 111941 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 111880 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 111819 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 111758 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 111697 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 111636 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 111575 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 111514 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111453 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 111392 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //