Array 1 4632-4400 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQPH01000040.1 Staphylococcus pseudintermedius strain ST496-5 AAH4_S41_L001_R1_001_contig_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4631 36 100.0 29 .................................... GCTAAAAGTCAATGTTACTTCATTCCTTA 4566 36 100.0 29 .................................... TCACAAACCGTTTATGAAAAAAATACATC 4501 36 100.0 30 .................................... CGAAAGTAAAGATAGTATGCAAGGTGCAAG 4435 36 80.6 0 ..........................AC.TC.TC.A | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.2 30 GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Left flank : AGAAAGAAGTAAAACTTTCCTTCGTGATTTCTTCTTCTACTTCG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1286-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQPH01000039.1 Staphylococcus pseudintermedius strain ST496-5 AAH4_S41_L001_R1_001_contig_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1285 36 100.0 29 .................................... GATGAACCTAAAAAGTCATCAATGTTTGA 1220 36 100.0 29 .................................... ATATTCACGCAATTTATGCCACTCTTTCA 1155 36 100.0 29 .................................... TTGAAACAGAAACACTTAACGATTCCGAT 1090 36 100.0 30 .................................... TGCAGGAATCGGTTTTGTCCTGTATGCGCG 1024 36 100.0 30 .................................... TATTTAAATTACGTTTCGCACGTTCAATCT 958 36 100.0 29 .................................... AAGTCATCAGCCGAAAACGCTTCTGATGT 893 36 100.0 29 .................................... GGAGAAAGCTTTGTGTCGACAGATACTAA 828 36 100.0 29 .................................... AATGTGCTTTTATACGTTGTTATCAGTTG 763 36 100.0 29 .................................... GGAGAAAGCTTTGTGTCGACAGATACTAA 698 36 100.0 30 .................................... AGAATACGCCGTCGTCTTACCGCTTGCAGT 632 36 100.0 29 .................................... CATTAACTGCTTTGTCAAACTCACTAATT 567 36 100.0 30 .................................... GGAAAATGTGGTAATGAAGGAGGATTTTGA 501 36 100.0 30 .................................... AGAGAAGAAATTGTGGCAATACGGTATTGT 435 36 100.0 31 .................................... CGTCGATTTCGACATAATCAATCGCCTTATG 368 36 100.0 29 .................................... AATATAAAAGGCGCTAAGAGGCGTTATAT 303 36 100.0 30 .................................... TGAGCCTTTATCATTTAGAACAGCTAGAGT 237 36 97.2 30 ............................A....... ACAATACTTGATGCAGGCAATAACAAGCTG 171 36 97.2 30 ............................A....... ACAATACTTGATGCAGGCAATAACAAGCTG 105 36 97.2 29 ............................A....... GGACAACAACAAGATATTGCTCAAGCCTA 40 36 97.2 0 ............................A....... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.4 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CTTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 6288-6042 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQPH01000172.1 Staphylococcus pseudintermedius strain ST496-5 AAH4_S41_L001_R1_001_contig_172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 6287 30 100.0 41 .............................. CTTCTAAGACGCGATATGATTCTAATTGGTCTTCATTCGAT 6216 30 100.0 44 .............................. GATATACTCCTTTACCATGTATTAATTCTGGACCACTATTCGAT C [6211] 6141 30 100.0 39 .............................. CATATTCGATCGTGTATATCAAAACTTTATGCATTCGAT 6072 30 96.7 0 ..........................G... | T [6044] ========== ====== ====== ====== ============================== ============================================ ================== 4 30 99.2 42 AACTACCCCGTAGAAGAGGGGACGAGAACT # Left flank : ATTCGA # Right flank : CATCTTGATGATCCCAATTGGCTTGGTTAAAAAGAAATCGATAATCCTCGTAGAATAGAGAAAAAGTATTAAAAATATATTTGATTTGATAAAATATTCTGCAAAAAAGAGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATTATTGAAATTAATCGACATTCAATTTCTAAATAAACAGAAACAAAAATAACTTTCATATAAATAATTTCTTTGCGATTAAGTTGGAATTAGAAATACTAAATACAAATAACAGCGAATGAAATGCATATTATTGAGGAATTGGATGTGTAGTGCAATTTCGAGAGTTACTACTTAAGAAAATAAAAAGAAGAAAACAAACAATAAGAATTAAATCTGAAGCAAGATATAAAAGCAAATATTTTTGATACAACCACATTAGTAAATACTTTATTAATTAGTATACGACTGAAAGCGAAGTAACAGCTAACAATGCTCCAGATATAGACATTAGTGTTACGAAAGAATAATATTA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACTACCCCGTAGAAGAGGGGACGAGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 1301-2337 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQPH01000173.1 Staphylococcus pseudintermedius strain ST496-5 AAH4_S41_L001_R1_001_contig_173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1301 36 100.0 36 .................................... ACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG 1373 36 100.0 34 .................................... ACTAGATACCCAGAACAAAATAGGTCTAACGAAA 1443 36 100.0 36 .................................... TCTATAAGTTCATTAATTCCGATACCTAGATTATCT 1515 36 100.0 37 .................................... TAATAGTGTTGTTCTCTATTAAAAGATACAATCCTGT 1588 36 100.0 34 .................................... TAGAATGTTATTATCTAAGTGGTCGATGTATTCC 1658 36 100.0 37 .................................... TCATACTAGCACCCCACTCTCTACTGAACAAGTATCA 1731 36 100.0 35 .................................... CTTAAAATCTAATTGCATTGTTATCAATTCCTTTA 1802 36 100.0 35 .................................... TTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT 1873 36 100.0 36 .................................... ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA 1945 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 2017 36 100.0 35 .................................... AAGTTAACGGCATTACCTAATAAAAATATTTTAGG 2088 36 97.2 33 ...................................C TCATCTTTCATGTCACTGATTAATTCATTTGTA 2157 36 100.0 36 .................................... TCAAAAAGTTCACTAATTCCGCTACCTAGATTACCT 2229 36 91.7 37 .......C..G...A..................... TCATAGTGTTCTTCTCCATTAAAAGATACTATACTGT 2302 36 72.2 0 .C....G.......A..T.....GC...C.A...CA | ========== ====== ====== ====== ==================================== ===================================== ================== 15 36 97.4 36 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : AAATCTGAACATCACAAAGTCGACCATATATCTCGCAACTGCGTTACCCGACTAAACAACGGGCGACAAGTTAA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //