Array 1 482820-483336 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOY01000001.1 Klebsiella pneumoniae strain JHTS005 NODE_1_length_719651_cov_139.178155, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 482820 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 482881 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 482942 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 483003 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 483064 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 483125 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 483186 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [483195] 483248 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 483309 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 492090-495289 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOY01000001.1 Klebsiella pneumoniae strain JHTS005 NODE_1_length_719651_cov_139.178155, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 492090 28 100.0 33 ............................ TGTCATCCAGTTCGCTGATTGTTGCTTCCATGA 492151 28 100.0 33 ............................ CAATTCATAAACAGGCCTTTTCTCTGTCGTAAG 492212 28 100.0 33 ............................ TGATGAATGATGACGGGCTGCTTGAGTGCGCCC 492273 28 100.0 33 ............................ TAAGGATATGCAGTCAGGAGGAGGGATTAGCGT 492334 28 100.0 33 ............................ TCCTTACGGATTTGCAGGCCCATAGCAGCCCAG 492395 28 100.0 33 ............................ CATTGTTCACATGGACGGGTAACTGGTTATTTA 492456 28 100.0 33 ............................ TCTTGTGCTTGCTGGTACCCCTGCGAGTTGCAA 492517 28 100.0 33 ............................ CCTGCAGGCTGGGCTTTGTGGGTACAAGTGACG 492578 28 100.0 33 ............................ TAAATAGCAAGTTTGTTTGCGGTCTTCACTGCT 492639 28 100.0 33 ............................ TGTTATCGCATGGTACGCCAATGCTGGTGGGCG 492700 28 100.0 33 ............................ CGATAAAGAACCCCCTCAGCGTCTTTGGTCAAC 492761 28 100.0 33 ............................ TTATGAGCAAATGCCCTAAGTGCAATGGCACAA 492822 28 100.0 33 ............................ TTGCATCCTGCCTACATGTGTCTTCAGGGTAAT 492883 28 100.0 33 ............................ TAGAACAAAGCGAGGGGTGCCTGGGGATGAAGT 492944 28 100.0 33 ............................ TGACACGCTTTCATCGTCAGCAATGAATGCCAC 493005 28 100.0 33 ............................ TGATAGCTGATTGCCAGTCAGGCGATTGATGGC 493066 28 100.0 33 ............................ TAGATGCATTTTGCTCAAGTCTACTGTGATTAA 493127 28 100.0 33 ............................ CCAGCCAGCCATTGCAGATTCATAATCTGCACG 493188 28 100.0 33 ............................ TACAAATCATTTCGTGGTGATGACGCCGCCACT 493249 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 493310 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 493371 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 493432 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 493493 28 100.0 33 ............................ TACCCCGTACCCGACCCGCTCTAAAGTGACCGG 493554 28 100.0 33 ............................ CAGGTTCGTACCGGGGCCGTAGAGGTCTGTTTC 493615 28 100.0 33 ............................ TTTTGCACAAGTATAAAAAGTGTAATAAAAATC 493676 28 100.0 33 ............................ CACCACGATCTCTATCACCGACGCGCCGACTAC 493737 28 100.0 33 ............................ TAGCGGTGGTGGCCATCGATAACCTTCACGCCC 493798 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 493859 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 493920 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 493981 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 494042 28 100.0 33 ............................ TTCTTCATTAAGCCAGGCAGAGCCGCCATGAAT 494103 28 100.0 33 ............................ CCATTTCGATCTGGTCGTAGACGTCTTCGCGGT 494164 28 100.0 33 ............................ TTCGATGGGGTCCGACTATATCCGGATAGTAAA 494225 28 100.0 33 ............................ TCAGGGTGTCGAATTTCTTCTTTTTCCTGGTAT 494286 28 100.0 33 ............................ CTCAGATATCGAAATAGCCTGGCGTCAGGCAAT 494347 28 100.0 33 ............................ CAGATCAAAGCCTGGACTGAGCGTCTTAGTGCG 494408 28 100.0 33 ............................ TCGCGAAATTCCCCGCTGCGACCTCTTATAAAT 494469 28 100.0 33 ............................ CCAAGCTGGTGCACGCGGGCAATTCTGGCGGCA 494530 28 100.0 33 ............................ TCAGCGGATCTGGCATACGTGCAAAAAATATCG 494591 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 494652 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 494713 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 494774 28 100.0 33 ............................ TTGAACCTCCCGCATCTGGTCAGGCAGGTTATC 494835 28 100.0 33 ............................ TTGAACCTCCCGCATCTGGTCAGGCAGGTTATC 494896 28 100.0 33 ............................ CAACCGGCACCGTGGCTGCAGGTGACGATTCCA 494957 28 100.0 33 ............................ CACATCGATGAGGACTTTTTTAAGTCTAATCTG 495018 28 100.0 33 ............................ TAATGGATCATCTATCACCCTGGCAAATATTTT 495079 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 495140 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 495201 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 495262 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 53 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //