Array 1 19073-19527 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSWG01000072.1 Corynebacterium diphtheriae bv. mitis strain 2929 contig_74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19073 28 100.0 33 ............................ GGAGTCACCGTAGGAAACCTCGAATCAGACCTC 19134 28 100.0 33 ............................ GCTCATTCGCTTTGGCGAGCACGCAGGCTGATC 19195 28 100.0 33 ............................ CACATAGCAGTCATCGCGTTCAATGAGTGACGG 19256 28 100.0 33 ............................ GGAGTCACCGTAGGAAACCTCGAATCAGACCTC 19317 28 100.0 33 ............................ GCTCATTCGCTTTGGCGAGCACGCAGGCTGATC 19378 28 100.0 33 ............................ CCACCCTCCCATGCTGGGATCTCGGGCCAGACC 19439 28 100.0 33 ............................ TTCGACTGCTTGGTGTAGGCATGTGATCGACTG 19500 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 33 GGCTCATCCCCGCTAGTGCGGGGAAAAC # Left flank : CTGATCTTTCCCTTTTCGAGCAAGCTGACGTCTCATCTTGTTGAACCATTCAAGAAAATCAAAAGGTTCCACGTCCATGTCGATATCCATGGAATGGGCACGCCAGAAAATACCCAGCAAAAGCCGCATCACAGCATAGTCTTGAGCTGGGGACTCCCCCTGAATATAGGCAACCTGCACCTCCCCCGCGAAAATATCTCGTATTCCAACTGAAATCTGGTTACCTTGAGTATCAAGAGCCAGAATCCAGCGGATCTCCAGTAACGAAGCCACCACCAACTCCTTCCTGATTGTTTTAAAACTCCCAACTTAGGAAGCACTTTCTCTACAGAATACACCTTATAGATATTAAAAGTTAATTTTTTCAAAATTTTTTAGTAGACCCATCATTTACTGATTTCTCTGAATGAAAACACAGATCCCAAAACCCGTTCTTCAACAAAGATTCATCCACCCTGCTAGTGCAAGGAATCACGGCGGTCCAGTTCTCAAAGTCCCTG # Right flank : CACATAGCAGTCATCGCGTTCAATGAGTGACGGGGCTCATCCCCGCTAGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCATCCCCGCTAGTGCGGGGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 2527-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSWG01000064.1 Corynebacterium diphtheriae bv. mitis strain 2929 contig_67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 2526 29 100.0 32 ............................. AACACCACAATCGCCCAAAACGTTGTCACAAA 2465 29 100.0 32 ............................. CGTCAGCATCACCAGCATCAAACTCTTCCACA 2404 29 100.0 32 ............................. CTGTCTACCGTTGTTGGCTCACCCATAACTAG 2343 29 96.6 32 ............................G TTGACTGCGTGCTCGGCTAAAACTTCATATTG 2282 29 96.6 32 ............................G TCCACCGCTGGTACACCCGCCCCGCCAAGATC 2221 29 96.6 32 ............................G AAATCGTAGACTCGATCGTCACAGAATCAATG 2160 29 100.0 32 ............................. CACTTAGGGCCGTTCTTCGCGGCGGTGTAAAG 2099 29 100.0 32 ............................. TCTCGTGTCGTCGAATATTTCAAGGGCGCGAT 2038 29 100.0 32 ............................. ACCCCCAAGACGGCACGCGTAGTACAAGTTAG 1977 29 96.6 32 ............................G GCGCTCAAAATTCGAGAAAATGACACCCATCC 1916 29 100.0 32 ............................. TCGACTATTTATCTGGTTCGGTGATTGGTGAT 1855 29 100.0 32 ............................. CAGTGGGGTACTGGAATCTCCCCCAGCGAAGG 1794 29 100.0 32 ............................. ACCCCACACCAAAACCAGTCGAACTCATGGAA 1733 29 100.0 32 ............................. CAGCCGCCGAGGTCGTATGGGGAGAGGGTGTC 1672 29 100.0 32 ............................. TCGAATGGCCATCCTGTGAGCCGGAACCCGAA 1611 29 100.0 32 ............................. CGCTTCATCGCTTCTTGCTGGGCTTCCAATTC 1550 29 100.0 32 ............................. GATCTCATTTCTATTGACTTTATCGGAGAGGA 1489 29 96.6 32 ............................G AATTCCTAATCTCCCCACTTGACACATAGGGC 1428 29 96.6 32 ............................G GAGGGGATGAGAATGTTACTACTCAATCTGAA 1367 29 96.6 32 ............................G TTCTTAAGGCTTTCGGGGTGAAAGTTCAAGAA 1306 29 96.6 32 ............................G CAGCCTGTCGAGACACCGCGCCAAGCTTTGAC 1245 29 93.1 32 .............T..............G TATTAATGACTGATCCAGCGTTGAAGGGTGTT 1184 29 96.6 32 ............................G ACACTGGTGACCCCCGTGAAATTGCTCAGTGT 1123 29 100.0 32 ............................. TAGCGCAGGCAACTCCCGTGCCATGCTGGGGA 1062 29 100.0 32 ............................. GGCGGCAAAATTCAATACCCCTGCGGCGGTGG 1001 29 100.0 32 ............................. ACCTCAACAACTACCGCCAATCAACTTTCGAT 940 29 96.6 32 ............................G CGATGTTCGCGATGACCCTCTTCCGTAACAAC 879 29 96.6 32 ............................G TAGATTTCCCCCTTTTGTATTCCTAGCCAGTC 818 29 100.0 32 ............................. CGTCCTAGATCAAGCAAGGGAGCAGCTCGGAT 757 29 96.6 32 ............................G GCAACCACCATCGCGGTGCTGAATCGTGAGCA 696 29 96.6 32 ............................G GGAATGGACAAATACACCGCTTTCCAGCTAGG 635 29 96.6 33 ............................G TAAGGCCTTATCGAGGTCATCGTCCCAAATGAC 573 29 96.6 32 ............................G TCACAGTGACAAAACAACACCATGTAAAGACA 512 29 96.6 32 ............................G AAGCTCATTCCCTTCAAGGGAGTACCGAAGGG 451 29 100.0 32 ............................. TGGCACCGGGCGGCCGACTCTGCAATGAAATA 390 29 93.1 32 .............T..............G GCGCTTAGCCTCGACCTCGACTTCTTGCAGCG 329 29 96.6 32 .............T............... CTGCCTGACCTGCCCATTCGACAGTGATAGAT 268 29 93.1 32 .............T..............G TCAAAATCAGCACTGTCAATCCTCATGTATTG 207 29 96.6 32 .............T............... ACCAACGACGAAAAACACATCAAGGGAATGGA 146 29 96.6 40 .............T............... TTATGGGCTTCTGGCGCGGCCAGTAACTCTGCTGGATCTT 77 29 96.6 0 .............T............... | C,A [52,54] ========== ====== ====== ====== ============================= ======================================== ================== 41 29 97.8 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : CTTACTGGGCGGCCAGTATCTGCTGGCTCTTGTTTTCCCCGGCAGAA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //