Array 1 27106-25420 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAJP01000018.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22941, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 27105 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 27039 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 26973 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 26907 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 26841 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 26775 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 26709 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 26643 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 26577 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 26511 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 26445 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 26379 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 26313 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 26247 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 26181 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 26115 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 26049 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 25983 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 25917 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 25851 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 25785 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 25719 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 25653 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 25587 36 100.0 30 .................................... TGCTAAGGTTTAATTGGCATTTTCTTTTAA 25521 36 100.0 30 .................................... CCTGTTGTGGGATGACAACAAAGGATTTGA 25455 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGCGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //