Array 1 1976-1783 **** Predicted by CRISPRDetect 2.4 *** >NZ_VITN01000036.1 Nitrospirillum amazonense strain BR 11880 Ga0314209_136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 1975 38 100.0 40 ...................................... GCCACCATGCCGGCCAGGGGATTAGTCAGAACGCGCCCCA 1897 38 100.0 39 ...................................... ATCGTCTCGGACGTCGTCGAGATCGGCAGGCTCACGGCG 1820 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================== ================== 3 38 100.0 40 CCTTTCCCCGGCTGTAATGGCCGGGGCCTCATTGAAAC # Left flank : TCGGACTATTCCCCGGCACTGGGCGATACCCTGCGCGACACCCTCACCGCCCATCCAGAAGGGGGGTGTCTGGACCTGGGCTGTGTCGCCGCTGCGGGCACCTTCACCCGCGCATCTCTGCCCACCCACGACGCCTTCGTGTTGGAGCACAGCCCGGCGGCCGTGCCAAAATTCCTGCTTACGCTGGCCAGCCAGCTACAAGACCTGGCAACCGTGCCCATGCTGGATATCACCGCCTACGCTCAACACCTGCCGGTTCGGGTGCATGAAACCCCAGGGGCAACCACCCCATGACGACTGCCGGCCGTTGACGCGAGCGGTCCGACACCCGCGAAAACCCCGGACCCGCTCGAATCCCGGCAAGGCCTTGATCCGCCTTCGGTTCTTGACCATCGTGCATCTGAAATCACCCCCCAGGCGGGGACGGAAGCGGGGCTCTGACGGACCCGCTCGAAATCGTCCGAAAATCCTGTTATGAATCAAGGGCCTCCTCAGGGGGG # Right flank : TCGATGAAGTGCTGTTCAGTCCCCTTGCCGGCCGGCGTGCTTTCCCCGGCTGTAACGGCCAGGGAAGGCCGTCCTCAGATCACCACGGCCTGGCGCGGGGCGACCTCGAAGCGTTTGCCCAGGCTTTCCACCCGGGGGTCGATGTCTTCGGCCGGGCCGATGTCCAGGATCAGGACGTGGTCCTCGCTGGGTTTGATCTCGCGCTCCAGGCGCATGGCCAGGGCCCCGCGGCGGCGGGCCGTCAGCCGGCACTGGAAGACCGACAGTTGCAGCCAGCGGCCATAGCCCTCCATCACCCTGAAGACGCGGCGGCCGCGCTTGGGGTCCGCGATGTCGTAGGTGACGATGTAGAGCCGTTCCTGCCGCGCCATGATATTCGCCTTTCCCTGGCCCCTCTCCCGTGGCCCCGGCTTCAGCGCGGCACGTAGTGGGGATAGGCCGCGACCTCCCCCCGCAGGTGCCGGGCCAGCAACCGCGCCTGGACATGCAACATGCGGCGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTCCCCGGCTGTAATGGCCGGGGCCTCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.10,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA // Array 2 10683-10199 **** Predicted by CRISPRDetect 2.4 *** >NZ_VITN01000036.1 Nitrospirillum amazonense strain BR 11880 Ga0314209_136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 10682 36 100.0 44 .................................... CAGCAAATATCGCCTGTAGCGCGGGCTTTCCAGCCATGAACCGC 10602 36 100.0 38 .................................... GTCACCCAGTCATCATCTGCCGCGCCGATCCCAAGCGG 10528 36 91.7 37 ...T................AA.............. GAAGATCCCCATGCACCAGATCGTGCAGATCTCCATC 10455 36 97.2 38 .......A............................ GTGTGCTCGAGCTGGCCGATCACCTGGTAGCCGGCGTC 10381 36 100.0 37 .................................... TGCATGGCGTCCATCTGGATACCAGCCGGCGCATCCA 10308 36 100.0 38 .................................... GAAATAAGCGCGTGTGGTGGGGCTATCGACGTGCGGGT 10234 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 7 36 98.4 39 TTTCCCCGGCTGTAATGGCCGGGGCCTCATTGAAAC # Left flank : TGGTTACCGTTGAAGATCTGGAAAGGCGCTATGATGTAAATCTTCAGGCCGTTATCACCGCAACCTATGCCGAATTCGCACAGAGATTGAGTGAACTACTATATCAGGAAGAATTTAAGGACGATTTCCTGGCCCTTGGAGGGAACATAGGTACATTATAAAATTGTATTGTGAGAATTGGGAACGCCTATTACGAGGATATAAATTTGCCGCCCCCATACCAAAATGGGCTTCATCAAGGTAGCTCTGGGGCAGTTATCTACAACGTGGTACGATCCTCACGGGGAAGCGGTGAACTGCCGAGTGGGGGCGCGAGCGGTCCGACACCCGCGAAAACCCGGGACCCGCTCGAATCCCGGCAAAGCCTTGATCCGCCTTCGGTTCTTGACCATCGTGCATCTGAAGTCACCCTTGGGCGGTGGGTGAAAACGGGGTTGAGTCAGACCCGCTCGAAATCAGCCGAAATTCCTGTTATGAATCAAGGGCCTCCTCGGGGGGCC # Right flank : AGCTCATAGATGGTGCTGATGTCCGTGGGCGGCAGGATCACCTTTCCCCGGCTGTAATGGCCGGGGAAAGGCGACCAGCGCCGGAAGTTTTGGCGAACGGAGCGGGCTCTTCGTGGCACCAGGCCCAGCGCGTGCATAAGCGGCCCGCCCACAACCGAGATCGAGACGGGTAATTTGCGGGTGGAAAATGCCGATCCGCGCCCTTAAGGTTGCCTTGGCCACGCCCGACGCGACCTTACCTTTAGAAGATCGGCATGCCTGACACCCGCGTTCTAACTGCGACCTTCGCCATCGTCACCTCGCTGTTCCTGTCCGGGGCGCGCCAGGACAAGGCGGAGATCCGCGCCACCAGCCTGCGCGGCGCCTTGCGTTTTTGGTGGCGGGCGTTGGCATGGGCCGAGGTCGACGGCACGGCGCCGGTGAACGATGGGGCGCGCCTGGCCCGGCTGGGGCGCGTGCGACGGTTGGAAACACTGCTGTTTGGTCACGCCGGCAGCCGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCCCGGCTGTAATGGCCGGGGCCTCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : NA // Array 1 96194-98012 **** Predicted by CRISPRDetect 2.4 *** >NZ_VITN01000008.1 Nitrospirillum amazonense strain BR 11880 Ga0314209_108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 96194 36 100.0 30 .................................... GCCCCTCCTCCATTGGCACTGGCCGCAGCG 96260 36 100.0 30 .................................... AGCATGGGCCGTGGGGTTGTAGCTGCCCGT 96326 36 100.0 30 .................................... TAATTTCTCCACCTCTCACTTTGCTTTTTC 96392 36 100.0 30 .................................... GGGCCAGTTGGGCTTGTTCAGCTCACAGGG 96458 36 100.0 30 .................................... AGTGTGGGGTCCAAATACTGCTGGCGAAAC 96524 36 100.0 31 .................................... ATGGTTACGCGACGTGAGGACGTTGGTTATA 96591 36 100.0 30 .................................... CGTGATAAGTGGTGGGGCCACGGAGATTCA 96657 36 100.0 30 .................................... CTATGTCGTTTCTGGATGTACGGAGACGCT 96723 36 100.0 30 .................................... AAAACACGCGATGGCGTAGCCTAAGCAGGT 96789 36 100.0 30 .................................... CGCGCCGTCAACCGCACTTGGCGCGAGTTC 96855 36 100.0 30 .................................... CATCTGCCGGACATAGAGCGCGTTGACCTG 96921 36 100.0 30 .................................... TGCAGCCTCTGCAACGAGCGGCTGAACCCC 96987 36 100.0 30 .................................... CCTGGCCGACGCCGGCAACTTCGGTCATGA 97053 36 100.0 30 .................................... TAAGGGCGCGCGACATATGTTTCTCGCCAT 97119 36 100.0 30 .................................... CCGCCCAAGCGACAACATCACCGACCTGCA 97185 36 100.0 30 .................................... GCCGTCTTCGGCAAGGACGTGGCGGCGGCG 97251 36 100.0 30 .................................... TTCCAGGTCCGTGTCCCGCCACATTCGCAT 97317 36 100.0 30 .................................... AAGGGATCTCAGCTCGTCTTCATCGGACCA 97383 36 100.0 30 .................................... TAGACGTTCTGGTAGTGGTGCACCAGCTCG 97449 36 100.0 30 .................................... CTGGGGAGGGCAGGGGGATGGGATGAGGGT 97515 36 100.0 30 .................................... TGAATCTCCTCGTACTCTTCACCCCTAGAA 97581 36 100.0 30 .................................... CCGGCCGATCGTCGTATTGGCGAAGGACCC 97647 36 100.0 30 .................................... GACGCCGTCGATGTTCATGTAGCCGGTGCC 97713 36 100.0 30 .................................... GCGCACGCGCGCAGGGGCCGCCCTTACACC 97779 36 100.0 30 .................................... TGCGACACCGGCAACGGCGGTGGACATCTT 97845 36 100.0 30 .................................... TCTGGCGCGCTCCGTCCATCAACATCTCGG 97911 36 100.0 30 .................................... GCACCTGGAACAGGTGATCGCGGACGCGCT 97977 36 94.4 0 ..............................TA.... | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 99.8 30 AGTTTAGCCGATAGGGATTTGCGGTCCAGCCGCAAC # Left flank : CCGGACGGCCGGATCTGGACCTGCCGCTATCGCCGCTGCCCCTCGATCTGGTCGCCGGTGGCCCGGATCGATCCCAAGGCGCCACCCAGGGGGATGAGGATGGCTTTGAATGGGTACAGGATCATGTGGATGATGGTGCTGTTTGATCTGCCAGTGCTGACCAAGCCCCAGCGGCGCGCCGCCTCGCGCTTCCGCCTGTTCCTGCTGGACCAGGGCTTTCACATGGCGCAATTCTCCGTCTATCTGCGCTGGTGCGTCGGCAAGGAGCAGGTTGAGGCGCTGTCGCGTAAGGTGGCCGCCAACATCCCATCCAAGGGCAGCGTGCAGATCGTCACCATCACTGACAAACAGTACCAGAACATCGGCACCTATGATGGAAAACGCCGCAAGGCCAACCAAAACCCCGCCCAACTCGCCCTGTTTTAGGGCGACGCGGACGGTTTCTACCAAGGATGAGGGCCGGATATTGCCCTTTCTTTCAAAGGGTTATCTCCGGTCCG # Right flank : CCTGGCGCAGACGGTGGAGCCGAAGAGCTTAGCCGATTGGGGCTGCCACTCAGCAACCCCTCGGCTTAGATGTGAATGATCACAGCGTCACGACCACGCGGCCGTTGACGGTGCCGGCGCGCAGGCGGTCGAAGATGGTGTTGATGGCGTCCAGCGGCTGGACCTCCACCTCCGCCTTCACCTTGCCCTCGCCGGCGAAGGCCAGGGCCTCGGCCAGGTCGGCGCGGGTGCCGACGATGCTGCCGCGCACGGTGATGCGGTTCAGCACGACGTCGAAGATGGGCAGGCCGAATTCGCCCGGCGGCAGGCCGATCAGGGCCACGGTGCCGTGGCGGCGGCTCATGCCCACGGCCTGGGTGAAGGCGGGGCGGGAGACGGCGGTGACCAGCACGCCATGGGCGCCGCCGATGTCGCTGTGCAGGCGCTTGGCCGGATCTTCCTTCAGGGCGTTCACCGTCAGGTCGGCGCCCAGCTTCCGGGCCAGGTCCAGCTTGTCGTCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTAGCCGATAGGGATTTGCGGTCCAGCCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.60,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //