Array 1 694609-694004 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VTIJ01000001.1 Listeria monocytogenes strain FSL L7-0633 NODE_1_length_867778_cov_14.183241, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
    694608	    29	  96.6	    34	..............T..............	GAGGAAGCCGCAGCGATTGCAGCTCATATCGATC   	
    694545	    29	 100.0	    35	.............................	ATTGTATTTCGGTTTCCGTATCCGTTTCCGCCATC  	
    694481	    29	 100.0	    34	.............................	CAAGAAGAACGATATGTTCCTGAAGAGGATTTTG   	
    694418	    29	 100.0	    37	.............................	AAATGGCATGCGTTAAGACAATCCCATTCTGCATCAT	
    694352	    29	 100.0	    34	.............................	TAAACTACAGATTCAAAACCATCATTTTCATGTA   	
    694289	    29	 100.0	    36	.............................	CAAGAAGCAGCAGCAATTGCAGCTCATATTGATCCC 	
    694224	    29	 100.0	    34	.............................	GCAATACTGAAAGCTTGGCACGGAAATCCTCCTG   	
    694161	    29	 100.0	    36	.............................	TCGACATAACACATATATTTAAAATCATTAAAACTA 	
    694096	    29	  96.6	    35	..............T..............	GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT  	
    694032	    29	  75.9	     0	A.....A.......TCA.A....A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        10	    29	  96.9	    35	GTTTTAGTTACTTAATGTGAAATGTAAAT	                                     	       

# Left flank :   GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTGATCTGTCGACCTTGAGTAGCGTGAAAAATACCGGAGACCGACAGAAAATTGTAAGTGGCTGGGGGAAGGGAAGCTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  CTCCTCCATACACAACTCCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACTA

# Questionable array : NO	 Score: 6.11
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTAATGTGAAATGTAAAT
# Alternate repeat :   GTTTTAGTTACTTATTGTGAAATGTAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [8-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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