Array 1 125358-124414 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRXA01000034.1 Escherichia coli strain A277 NODE_5_length_242325_cov_83.2893, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125357 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 125296 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 125235 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 125174 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 125113 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 125052 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 124991 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 124930 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 124869 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 124808 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 124747 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 124686 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 124625 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 124564 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 124503 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 124442 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 152156-150907 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRXA01000034.1 Escherichia coli strain A277 NODE_5_length_242325_cov_83.2893, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 152155 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 152094 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 152033 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 151972 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 151911 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 151850 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 151789 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 151728 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 151667 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 151606 29 100.0 32 ............................. CGCCCCTTTTTCAGATCCAATGCTGCAGGCGT 151545 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 151484 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 151423 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 151362 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 151301 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 151240 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 151179 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 151118 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 151057 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 150996 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 150935 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //