Array 1 551-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGG01000456.1 Escherichia coli strain KCJ3818 NODE_233_length_7470_cov_2.67438_ID_465, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 550 29 100.0 32 ............................. CAGGAGATCCCCGGAATATGGACCCAGAGCAG 489 29 100.0 32 ............................. GTGGGTAAATTTAAATGAGTGATAATAATGAG 428 29 100.0 32 ............................. GTCGCAGGCCTGGCAGTTCTTATCGTGATCTA 367 29 100.0 32 ............................. CCTACCTTTTAACACAACCACGCTTTATTGCA 306 29 100.0 32 ............................. CGTCGATTCATCGCCCCCGGTGGAGTGAAGCA 245 29 100.0 32 ............................. CAAACGATGAGCGGGCCAACGAATCGCCGTTG 184 29 100.0 32 ............................. ATCCACGGTTCGACGCCGATCGCCGTGGCTAT 123 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 62 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GAGGCGAGGGAGATCAGAGATCAGGCTATTACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13425-12970 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGG01000288.1 Escherichia coli strain KCJ3818 NODE_103_length_13447_cov_2.77515_ID_209, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13424 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 13363 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 13302 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 13242 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 13181 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 13120 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 13059 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 12998 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACACTGCATATACCGCAATCCG # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1959-527 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGG01000103.1 Escherichia coli strain KCJ3818 NODE_515_length_2056_cov_1.56661_ID_1029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1958 29 100.0 32 ............................. CTGCAACAGAGATTTTAACCTCTAAAGCAGGA 1897 29 100.0 32 ............................. GATATACCATGTCATACAACCGACCGTAGCCA 1836 29 100.0 32 ............................. GTTATCTATTGTAGAGGGTGAAGGTTACAGCC 1775 29 100.0 32 ............................. TCTTGAAGATATCCAGCCCCAACAGCTGTCCT 1714 29 100.0 32 ............................. GCAAACAAAACGGCCACGTAAAGTGGAATGAC 1653 29 100.0 32 ............................. TGGCTATAGTATCACATGATTTCTATTTGTCA 1592 29 96.6 32 ............T................ ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1531 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 1470 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 1409 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1348 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 1287 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1226 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 1165 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 1104 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 1043 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 982 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 921 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 860 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 799 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 738 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 677 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 616 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 555 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //