Array 1 1325524-1323299 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026538.1 Desulfovibrio carbinolicus strain DSM 3852 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1325523 29 100.0 32 ............................. GCTGCGTCTATTGCGCCCAAGCCAACGTCAAT 1325462 29 100.0 32 ............................. GTTCCGCCGTTGCGTCCGCGCTGGGAAACGAT 1325401 29 100.0 32 ............................. CAGACCACCAGCGCGCCGAGCTTCACGCTGTG 1325340 29 100.0 32 ............................. GTCATGCCGTCTGCGTCCATCGTGCTGTCTGG 1325279 29 100.0 32 ............................. GTGACGCAGGGCCAGGGCCTGGAGCGAGTAGA 1325218 29 100.0 32 ............................. TGCGGAACCAAGAATACGAACCGAATCTTCCG 1325157 29 100.0 32 ............................. CCCCGGGGTTCTCCATCCACGCGTCGAGTTCG 1325096 29 100.0 32 ............................. CCCTCTCCGCTGTTCCTGGTTCTTCATCTTCA 1325035 29 100.0 32 ............................. ATCAAGAAGTCCAAGCTTTACGCGGACAAGAC 1324974 29 100.0 32 ............................. CCTCTACGACGGGTCAGGCGGCCCGTGTCATC 1324913 29 100.0 32 ............................. GCCTTGGCCGTGGCCCTGCGCCTGTGCGCCAA 1324852 29 96.6 32 ............................A TAGTCTTGTGCGTTGACAACGACTTGCCAGGC 1324791 29 100.0 32 ............................. GCCCGGGTCTTGGGGCGTGGAGAGTGGCGCGC 1324730 29 100.0 32 ............................. AAAAAGGGGCAGGACGAAAAGCCGGGCTACGG 1324669 29 96.6 32 .........C................... GCCAGCAGTTTGCCTATCCCATCGCCGCCATC 1324608 29 96.6 32 ............A................ TCAACAAATCCCGGAGCCGAGATTCGGGTTGA 1324547 28 93.1 32 .....T..........-............ CACATGGCGCGCAACCTTGCTCGGTGGTGGCG 1324487 29 96.6 32 ................T............ GCATGGAACCGCCGGAACTCCTCGGTGTTGGT 1324426 29 100.0 32 ............................. CCGCTGCGGCCGACCATGGGCGAGAGCATCGC 1324365 29 96.6 32 ........................C.... CGTCGCTTGAGCTTTCCGGCGTCGTAGACAAA 1324304 29 100.0 32 ............................. CTGGTCCTCGATCTCGGCGCTCATCCTTTCGC 1324243 29 100.0 32 ............................. CCTGTTCCATCTGCTTTTCGTAGACAACATGA 1324182 29 93.1 32 ...........G.A............... TGGTCAATCATCTCGTAGTTGGTGATGTTGAC 1324121 29 93.1 32 ...........G.A............... CTATTGGCCCGATCACTGGCCCGGTTGACAGC 1324060 29 93.1 32 ...........G.A............... AAGATTTGCAACGTGGCGCTCAAGCGGCCAGT 1323999 29 93.1 32 ...........G.A............... GTTTACACAACCTACTGTTACCTCGGTTATGC 1323938 29 93.1 32 ...........G.A............... CCACATCCGTGCAGGCCATAGCCAACACAACA 1323877 29 93.1 32 ...........G.A............... TTGACCGCCGACGTCTCTCCTTGCGGACCCGT 1323816 29 89.7 33 ...........G.A.........A..... AACAACTCGCCCCCCAGGAACTCACCCTTTTGG 1323754 29 93.1 32 ...........G.A............... CCGTCGACTGCATGACGGACGCTATATCAGGA 1323693 29 93.1 32 ...........G.A............... CTCCGCGCTGCCGAAGGTGGCCACGGCCTTCT 1323632 29 93.1 32 ...........G.A............... GCTCCCAGGTCGTTGGCCGTGCTTTTGCCGCT 1323571 29 86.2 32 ...........G.A............G.A CCGAGGCCCGATCCTGATCCAGGCAAGCCACT 1323510 29 93.1 32 ...........G.A............... GGCTTGCGCTTGCTCGAGGAGGTCGCCTAGCC 1323449 29 89.7 32 ...........GAA............... GCCATATCCTCATTTTGAACGGACCAGCTTCG 1323388 29 93.1 32 ...........G.A............... TTCGACATGGGTGAGAACGGAGAAGACGAGGC 1323327 29 82.8 0 ...........G.A...........A.TT | ========== ====== ====== ====== ============================= ================================= ================== 37 29 95.9 32 GTGTTCCCCGCAGGCGCGGGGATGATCCG # Left flank : GCCGGTGTGTTCCCCGCAGGCGCGGGGATGATCCGAGCACCCATGATTTTGGCGCGAGTGGTGGCAAGTGTTCCCCGCAGGCGCGGGGATGATCCGCCGGATATGTTGTGGCCGATCCAGTTGAGCGTGTGTTCCCCGCAGGCGCGGGGATGATCCGACGCTCGTCTCGACGCTCAACGCCTACGGCGAGTGTTCCCCGCAGGCGCGGGGATGATCCGAACTGACGTTCTCGCCGGTCTTCGGCATGATGTGTTCCCCGCAGGCGCGGGGATGATCCGACAGTCTTTTGAAAGAATCAGCTACCACCGGCATAGCCGGTGGTATGATGATGCCCCCTCGAAGGGGGCTAACGACTCAAGAATAAGAAACTTCCGGTATCATGCCATTATGAATCACTTGTCGGATTGATTACCGAAGGCCAGATTCCCGGAACGGTCGAACCGATTCGGGTCACACCGCCAGAGGCGGTGGTTTATCTGTTGGAATTAGCGAGGCACGTC # Right flank : GTTGCCGCCGACACCGGCTATCGCGGGCTGATGGTCAGACGAAGACCGGCAGTGCCAAGGTAGTCCTTGAGCCGACACCGTGTCTCTGCTTCCTCGCCCCGCGTAGGCAGCGCCAACGCCTCAATGATATTGCGCAAAGCATTGGTCACCACGGCGCAGTCGCCATCTTCCAAAGCGGCATTGAGATAGTCTGCCGCCTCTCACGGGTCGCGGAGGTCCTCAATCAAATCATGCTGGTAATCGCGATGCTTCGTCATGGCACCGCTTCTCTATGTAAGTGAAATATTGCGGGCGACCACAGTCACACGGCGGATGCACGTTGCCGTTTCACCTCTTCGTACATGGCGTCAGGGGCGACGTCCGCGCCGCTTGGCCAGCACACCGTCCCGGTTTCGGCGTCGACGCGCACTTGTTCGAAATAGCCGGGCTCATCCCACAAGGCGAACACCCCCTTGTGCGGCACGTCCGAGAGGTCTACGACGCCATGCACACCATCAGCA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGATCCG # Alternate repeat : GTGTTCCCCGCGGACGCGGGGATGATCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1331386-1325746 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026538.1 Desulfovibrio carbinolicus strain DSM 3852 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1331385 29 100.0 32 ............................. ACAGGATAAACCACCTGGGCAACGCCGTCTAC 1331324 29 100.0 32 ............................. GCCAACATGCCGCACACGCCAGCCATGGTCTT 1331263 29 100.0 32 ............................. TGCCGCTGCTGACTTACTCAAGGAGCCCACAT 1331202 29 100.0 32 ............................. CAAGCGTGGTCGGTCCCTGCCCTGTGAAGAGA 1331141 29 100.0 32 ............................. CTGCTCGCCCAGGGCGGCGATCGTCGCCTTGA 1331080 29 100.0 32 ............................. CTCCTCACGGCGGCGGGTGAAAATGTCCTCAA 1331019 29 100.0 32 ............................. CAATCACAAACGAGGCACTGGACTTGGCCCGC 1330958 29 100.0 32 ............................. CGATCCTCCGCAAACACGGCGGCATGGCCGCA 1330897 29 100.0 32 ............................. TCCTCATCACGTTTGCGAGAAAGAAAAACGCC 1330836 29 100.0 32 ............................. ACCTGTGCGCCGTCGTTGTGCGCCATTTCCAG 1330775 29 100.0 32 ............................. GTCGTGCTCGTTGGGTCAGGCTACACGTTTTC 1330714 29 100.0 32 ............................. GCAGAGACGCACCCAAAATTTAACGACTCTAA 1330653 29 100.0 32 ............................. CGTAACGCCGAGGCTATCCGCACCGGCAAGCT 1330592 29 100.0 32 ............................. CTGGACGCCCGGAGATCATGCCGACCACGAGA 1330531 29 100.0 32 ............................. TCCCCCACGACGATGACGCCCCCGGCCCTGGC 1330470 29 100.0 32 ............................. CCCGCTACGGGGACGCTGACCCCGGAAATCCA 1330409 29 100.0 32 ............................. GGACGGGGTAAGGTTATCTGTCTGGATTTTTA 1330348 29 100.0 32 ............................. CCCGTGCCGCCTTTGCCCGCGTGGCCGCCGAG 1330287 29 100.0 32 ............................. CCCGCGCCCTCTACCGAGACGGCCGAGTTCGC 1330226 29 100.0 32 ............................. TTGAAATACCCGATCCGGCCAGGGATATGGCG 1330165 29 100.0 32 ............................. TAATCCGCGCTGGTGCAGGGCCAGGGCTTCGG 1330104 29 100.0 32 ............................. GCCTTACGGTTGGTTATTTTACTGTGAATGTC 1330043 29 100.0 32 ............................. TGTTCGCGGAGGGTGGGCGCGACTTTTCGGCG 1329982 29 100.0 32 ............................. ACGCCTTAGACGCCAACACGCGCCAAGACGCC 1329921 29 100.0 32 ............................. GGCGGATCGGCCCCGGCCGAGGTGAGCAACGA 1329860 29 100.0 32 ............................. CCGACGCGGGTGACGGGTTTGGTCTATCCGGT 1329799 29 100.0 32 ............................. GTCAACACGATGAACCCGGGCCGGCCGAACGC 1329738 29 100.0 32 ............................. GTCTTCCGGGATGCCGTCGCCGACGCCCATGG 1329677 29 100.0 32 ............................. GCCTGCACCTTGAGCTTTGCCAGGGCAACCGC 1329616 29 100.0 32 ............................. ACGGGCCACGCCAAGCGTGTTTATCGCATCAC 1329555 29 100.0 32 ............................. ATCGCGGAGCAGACGCTGGACGAGGAACCCTT 1329494 29 100.0 32 ............................. GCAGGCGTCGTGCCGTTCGGGTTCCACGGCAT 1329433 29 100.0 32 ............................. AACGCCAACGTCAAAATAGTGGGCGACTGCAA 1329372 29 100.0 32 ............................. GCCACGACGGCCACGGGGGCGGAAATCAACGA 1329311 29 100.0 32 ............................. CACGAAAACGCACAGCCGCCAGACGTTCGCCC 1329250 29 100.0 32 ............................. AATACCAGTAGTGGCCCGCTGGAACTCTTCTC 1329189 29 100.0 32 ............................. CGCATCACGCAGAACGTGGTCTACACCGGCTC 1329128 29 100.0 32 ............................. TCCTGGCCTGGGGCGTGGCGCAGGAGACGTGG 1329067 29 100.0 32 ............................. ATCGATAGTCTTCTCGTCGGGTAGTTCTTTGT 1329006 29 100.0 32 ............................. GGCATAGCTGATTCCAGCAAGCTCGCCAGCGA 1328945 29 100.0 32 ............................. GTCTGCGGCAGATGATTGAGCAATAGCCGAAA 1328884 29 100.0 32 ............................. GCCGCAATATCCTTCGCTCCTGACAAACCGCA 1328823 29 96.6 32 ............................C CTCCAAGGTAGGATTCCCGGTCGAGAAACGCC 1328762 29 100.0 32 ............................. ATGTAGGCCATCACGGGCGTGATCCGATCACC 1328701 29 100.0 32 ............................. CCGGTGGCGGTCAAGGCGGCAATGGCGGCGGA 1328640 29 100.0 32 ............................. GAGGCCTTTCGTGTCCATTGGCCGCCATTCCA 1328579 29 100.0 32 ............................. GGCGGATCGCATACGGCGATGGTGCTTCGCCT 1328518 29 100.0 32 ............................. CCCTGCTTAACGGCGACGGCCTCATAAAAATC 1328457 29 100.0 32 ............................. GCCCACGCCGCCGGCACGGTGACGATCAAGCT 1328396 29 100.0 32 ............................. AAAACGTCTCTGGCATCGTTTCCCAACTGTTT 1328335 29 100.0 32 ............................. GGAAGGTCTTTTGCCTTAATTGCATTTGCATC 1328274 29 100.0 32 ............................. GCCGGCGAAGTGTGTGAACTTTACTGGCAGAC 1328213 29 100.0 32 ............................. TCCGTGATGCGCCCGGCCCGGTCCGTGTCTGA 1328152 29 100.0 32 ............................. GCGATTCTTTGAGCATGTCCCGGATGGACTTG 1328091 29 100.0 32 ............................. CCCTGACCGGGCAACGGGTCTCGCTCCAGCGC 1328030 29 100.0 32 ............................. ACATTTTTGTCCCGCAGTCCATCACGTTTACC 1327969 29 100.0 32 ............................. GGCCGTCGCTCGGGCCTTTTCGCCCTGCATCA 1327908 29 100.0 32 ............................. GGTATCTACCGGGGGCGCATGGGGTTCTATCC 1327847 29 100.0 32 ............................. CCGCCCCCGGTCCTCTCGGTCAGCCCGGCGCG 1327786 29 100.0 32 ............................. CGCCGAGGCAGACCCCTCTATCTGGGTCATGC 1327725 29 100.0 32 ............................. GCCCCGGCGTCAACGGCTTTGGACAGGCCCTT 1327664 29 100.0 32 ............................. AGGCGTGGATAGCGGCGCAGGGGCCGGTGAGA 1327603 29 100.0 32 ............................. ACCCTTAGCCTCAAGATCGATAGTCTTCTCGT 1327542 29 96.6 32 A............................ GCTCTCCATCTTGGACGCCACGCCGGAAATGA 1327481 29 100.0 32 ............................. ATTGGCATCGAGGGCCGCCTTTCTCGACTCCT 1327420 29 100.0 32 ............................. ACGACATCCGCTACCTCCTCGACAGAAACGAG 1327359 29 100.0 32 ............................. TTCCACTTCTTTCCTTGGTGGATTGACGAAGA 1327298 29 100.0 32 ............................. GTGGCTGACGCTTATTCGGCCAGGATGCAAGA 1327237 29 100.0 32 ............................. TCAAACTTGCCCCTGGCTTATGCCAAGCGCAT 1327176 29 100.0 32 ............................. CCTCATCGCCCGCCCCCGGCCAGGGTGGGTTT 1327115 29 100.0 32 ............................. GTGGAAGCCTGGGTCGAAGGCCTGCCGGAGCA 1327054 29 100.0 32 ............................. GACAGGGAGAGAGGCCGGACGAGGGAGCTTTA 1326993 29 100.0 32 ............................. GCCCTGCGCCAGGAGCGCGCCCACGCCCTGGG 1326932 29 100.0 32 ............................. CTGGTCGTCGCCATCCTGGGTCTGCTGGCCGT 1326871 29 100.0 32 ............................. GACGCCGAGGCCGAAATGGCGGGGCAGAAGAA 1326810 29 100.0 32 ............................. CCGTCTCCTGCGTAGCCCTGGCCATAATGCGC 1326749 29 100.0 32 ............................. CAAACCGGCCACTGCATCGGCTGCATTTACCG 1326688 29 100.0 32 ............................. GACAACCGCGACGGGTTGTCGGCCTCTCTTGG 1326627 29 100.0 32 ............................. TAGGTGGGCGCGGCCGACGTGGCCCGGGCCAG 1326566 29 100.0 32 ............................. GCCTGCGGACATTGCCTCAGGCACAAACTCAG 1326505 29 100.0 32 ............................. TTCGATATCTAACCTTAACCGTACAGGAGACT 1326444 29 100.0 32 ............................. AGTCCTGCTTTCAAACTTCTCTTCCAGCTCCT 1326383 29 100.0 32 ............................. CCGTCTCCTGCGTAGCCCTGGCCATAATGCGC 1326322 29 100.0 32 ............................. CAAACCGGCCACTGCATCGGCTGCATTTACCG 1326261 29 100.0 32 ............................. GACAACCGCGACGGGTTGTCGGCCTCTCTTGG 1326200 29 100.0 32 ............................. TTCGATATCTAACCTTAACCGTACAGGAGACT 1326139 29 100.0 32 ............................. AGTCCTGCTTTCAAACTTCTCTTCCAGCTCCT 1326078 29 100.0 32 ............................. ACCGCCAAGAAGGACGCGGCCGGCAAGCCGGT 1326017 29 100.0 32 ............................. AGCACCCATGATTTTGGCGCGAGTGGTGGCAA 1325956 29 100.0 32 ............................. CCGGATATGTTGTGGCCGATCCAGTTGAGCGT 1325895 29 100.0 32 ............................. ACGCTCGTCTCGACGCTCAACGCCTACGGCGA 1325834 29 100.0 31 ............................. AACTGACGTTCTCGCCGGTCTTCGGCATGAT 1325774 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 93 29 99.9 32 GTGTTCCCCGCAGGCGCGGGGATGATCCG # Left flank : GCGCATCATACCGGAGATCGAAGACGTGTTGTCGGCCGGGGGGCTTCCCGTGCCGCAAGCGCCGTCGGAGGCGGTTGGTCCGGCTTTCGCGGACGAGGAGGGGCTTGGGGATGATGGTCATCGTCCTTGAGAACGCCCCACCTCGTCTGCGCGGCCGCCTGGCAGTATGGCTGCTGGAGATCCGGGCCGGTGTGTATGTGGGCAATTACTCCGTGAAGGTCCGTGAGATGATCTGGCATACCGTCGAGGCCGGGATTGAGGACGGCAACGCGGTGATGGCCTGGAGCGCGCGGAGCGAATCGGGCTTCGAGTTTCGCACCCTGGGGCCGAATCGTCGTATCTCGTGTGATTTTGACGGGTTAAATCTTGTATCGTTCCTGCCCTTGGCATCGCCCGAGGGAGCCGAATAACCAATTGCGTTCATTGACAATTTATAAAGTGTATTCGGTAGCTTCCTAGATGTTGAAAAACATCTGTGGATTCAGGGTTCTGGCGTACCA # Right flank : ACAGTCTTTTGAAAGAATCAGCTACCACCGGCATAGCCGGTGGTATGATGATGCCCCCTCGAAGGGGGCTAACGACTCAAGAATAAGAAACTTCCGGTATCATGCCATTATGAATCACTTGTCGGATTGATTACCGAAGGCCAGATTCCCGGAACGGTCGAACCGATTCGGGTCACACCGCCAGAGGCGGTGGTTTATCTGTTGGAATTAGCGAGGCACGTCGTGTTCCCCGCAGGCGCGGGGATGATCCGGCTGCGTCTATTGCGCCCAAGCCAACGTCAATGTGTTCCCCGCAGGCGCGGGGATGATCCGGTTCCGCCGTTGCGTCCGCGCTGGGAAACGATGTGTTCCCCGCAGGCGCGGGGATGATCCGCAGACCACCAGCGCGCCGAGCTTCACGCTGTGGTGTTCCCCGCAGGCGCGGGGATGATCCGGTCATGCCGTCTGCGTCCATCGTGCTGTCTGGGTGTTCCCCGCAGGCGCGGGGATGATCCGGTGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1629542-1635413 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026538.1 Desulfovibrio carbinolicus strain DSM 3852 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1629542 32 100.0 35 ................................ CCATGGCCATCACCCTGGACGCCTTGTGGTGCTCG 1629609 32 100.0 35 ................................ CCTTTCACTTGCCCCTTGGCGTTGAGAAATCGGCC 1629676 32 100.0 35 ................................ CCTTCACGGACAACTCCCACGGCAAGGCCGACGAT 1629743 32 100.0 34 ................................ TCCGCATCATTTGTGAAGTCGCCGCCGGTCATGA 1629809 32 100.0 35 ................................ GCGCCTACAACGGCGGACCTGGCAACCGGCATAAC 1629876 32 100.0 34 ................................ CAGCTGTCCCAGGGGCTGCAGGGGCTGGACCGTT 1629942 32 100.0 34 ................................ TCATGGCGGCCAACCCCCGACACCGCGACCTCGT 1630008 32 100.0 35 ................................ GCGCAAGAGGCGAGCGACCTCTGCACCAGACAAAG 1630075 32 100.0 33 ................................ ACCTTGCGCGAGGGGGTGGTGTTGTGAGTCTCG 1630140 32 100.0 34 ................................ TTGTACCAACCGCAGAAGCGTCCGCTGCGGGCCG 1630206 32 100.0 35 ................................ CCGGGCTATCCGGTCGCCCTGGTCGGCGACGGCGA 1630273 32 100.0 34 ................................ TCGCGGCGGCACTCTTTGGCCGCCGGCATGTAAT 1630339 32 100.0 33 ................................ ATCTGGGGCGCGCCTGGGCTTGGCAAGAGCGCG 1630404 32 100.0 34 ................................ GGTCTCGGTCTGGCGGTTCTCGACCTGGGCGTAG 1630470 32 100.0 35 ................................ CACATCCCGTGCCCGCATTGTGAGCATATGCAGGT 1630537 32 100.0 35 ................................ CGGGGGCGCAGATGACCACCGACTTCGAGCGCCGC 1630604 32 100.0 34 ................................ AAGGCCAGGGCCGTCACGGCTCCGACAACACCAG 1630670 32 100.0 34 ................................ GCGTCCGAAAACGGCATGTACTGGCGCGCCGCGT 1630736 32 100.0 35 ................................ AAGTCTAACATTGACACGATCTTTCAAAATTTGGG 1630803 32 100.0 33 ................................ CGCAGTAACCAGTCTGGACAAGGGGCAGGAACG 1630868 32 100.0 35 ................................ TACCCATAGTTTACCCCACGACGCCACGGCAGGCC 1630935 32 100.0 34 ................................ AACGTCCAACTGCCGGCCGAGGAAGCGTAGCCCA 1631001 32 100.0 35 ................................ GTCACGGGAATGGGGCTACGAGCAGCCCAGCTTGA 1631068 32 100.0 35 ................................ CCCACCCATTCGTAACCCACGCGAAACGGCGTCAG 1631135 32 100.0 36 ................................ AAATCGCAGTCGCTCGACGGGCTACCTGATCCGCAA 1631203 32 100.0 33 ................................ ATCCAAGGCATCGACGACGCTGGAAAGGCTGGA 1631268 32 100.0 33 ................................ CCACCAAGCTGGCCCGGGAAAAGGACCGCCGCG 1631333 32 100.0 35 ................................ CCTTGCCCAGGTCCGTAGCCCCATGGAGCAGTCGT 1631400 32 100.0 35 ................................ AGGCTGCTGCGCCAGCTTTCGCCCGAGCTGGGCGA 1631467 32 100.0 34 ................................ AGCGACTTGATGGTGTCTTCGATGGACTCGGCCG 1631533 32 100.0 33 ................................ AAATTGACCGTGGACGATCTCCAGAAGATCATG 1631598 32 100.0 36 ................................ AAAAGCTCTTGGTTGCCGGACTGCGAAGCCGCGCGG 1631666 32 100.0 34 ................................ AATCTCTCTGTGACGAGATCGACCATCTGCGCGG 1631732 32 100.0 34 ................................ TGTTCCCCCACCTCTTACGAAGCCAGTGGCGTAT 1631798 32 100.0 34 ................................ TCTGTAACGAAAACAGCGAAAGCAAAGTGGGTCG 1631864 32 100.0 35 ................................ TCCGTCTGACGGGGCGGCTTTTGCATCGCGCGCCT 1631931 32 100.0 34 ................................ GCTTAATTGGTCCATCGCAAAACCTCTTTGTTGT 1631997 32 100.0 34 ................................ ACCATGCCGGCCATGAATATCACGGACGATCAGG 1632063 32 100.0 35 ................................ CAGGCGCTGCAAACGGCACAATGGGCCGAGCTTAT 1632130 32 100.0 34 ................................ GTCCATCTCCCGACCGGCTGAACAATAGCCAAAC 1632196 32 100.0 34 ................................ ACCGTCTCCGCGACCGACTAGGCGGGCCCCATGC 1632262 32 100.0 33 ................................ TTGAGCTCGTCCAGTAGTTCGCCCATCTCGTCG 1632327 32 100.0 34 ................................ TGTGCCGCCTCGGTATAGGCGGCCAAAGCCGGGA 1632393 32 100.0 35 ................................ TCCCCATTGCCACATTGCCCCACAACAGTCCTCGC 1632460 32 100.0 34 ................................ GGCCTCAGCGAATCCCAGATCAGACGGATTTTGG 1632526 32 100.0 35 ................................ GAGCACCATGACGGCCATGGTCAGGGTCTTGGACT 1632593 32 100.0 35 ................................ TGCGTTGCGTGTTGTGAAACCGGCCCCTCGCGGGA 1632660 32 100.0 34 ................................ ACTGTTCGCAACGACAACTCCGTCCGCCGGGCAT 1632726 32 100.0 34 ................................ TTGAACCGCGACACAACAGGGCCGCCAGCAGACA 1632792 32 100.0 35 ................................ GTCTATGCGCCCCGGCGCGTTGGCGAGAAGATCAA 1632859 32 100.0 34 ................................ TTGAACCGCGACACAACAGGGCCGCCAGCAGACA 1632925 32 100.0 35 ................................ GTCTATGCGCCCCGGCGCGTTGGCGAGAAGATCAA 1632992 32 100.0 35 ................................ CTTGGCCTACACGCCCGACGCCGAGCATGAGGTTT 1633059 32 100.0 34 ................................ CGGTCCTTGTTGGCAGCGTTGCCGCTTCTGGCCT 1633125 32 100.0 33 ................................ TCACAAGGTCACGAAGCAATGACGCACGACACG 1633190 32 100.0 35 ................................ GAGCTGTCCGGCCACGTTGACCGGATCGACGCCAC 1633257 32 100.0 34 ................................ CCAACACCGCCGGCGCGCTCAACGTCATCGCCCT 1633323 32 100.0 35 ................................ CGAGAGGGAAATGCGCCTGCGATGGCAGTATGTGA 1633390 32 100.0 34 ................................ CGCTTATGTTAAACGGAACGGCTAGTACCGTGAC 1633456 32 100.0 34 ................................ ACGTCCCCAAGGGCCGGCCCGAAGTCGGCCATCC 1633522 32 100.0 36 ................................ GATTTTGCAAGGCACTGCGTCAGCCGCTCGACCTCG 1633590 32 100.0 35 ................................ TTGCTCGAATCGCGTCAATTTGCGCTCAAACGCCA 1633657 32 100.0 35 ................................ GTTGGCATCTTGGGCGCTAAAGTATTCAACGCCGC 1633724 32 100.0 35 ................................ CCACCGTCAGAAACGGCGTCGTCATTAACGCCGTC 1633791 32 100.0 35 ................................ AGCAACGACTATTCCGGCTCGTCCTACTCCTCGGC 1633858 32 100.0 35 ................................ TGGACAATACCCCAGCCGGTCACAACGCGCCCCGG 1633925 32 100.0 34 ................................ CTCGCCATAACCTCCCCCTTGTATCGCGCCGCCA 1633991 32 100.0 34 ................................ CCTGACAGCGTTACGGAATTGTATGAAGTGCTGC 1634057 32 100.0 34 ................................ CTGTCCCGGTCGCCGGCAAAGCACCGGTGGGACC 1634123 32 100.0 33 ................................ TTTTTCGCCCGGGCCAGACCCAGGCCCAACAGG 1634188 32 100.0 34 ................................ GCCGCGCGCCACGGCGTATCCATCGGAGCCGCCA 1634254 32 100.0 35 ................................ GTGCGCAACGTGCGCAGCGGCCAGGTGTGGGCCGT 1634321 32 100.0 35 ................................ ATTCGTCCTTCAAATGATCGACTCAATAACTCACA 1634388 32 100.0 35 ................................ AAGAAAAGATAAAGTCGGGCAAGCTCTCCCAGGAA 1634455 32 100.0 34 ................................ GAGACGGAGGCGAAAAAGATGCGGCCGTCGATCA 1634521 32 100.0 34 ................................ GACACCATCGGCGCATACGCCGAGAACTTGACCT 1634587 32 100.0 34 ................................ TTGCGGATCAGGCCCATGATCCAGGTCGTGGTCT 1634653 32 100.0 35 ................................ AAATTCCGCTCAGGCCTAAGGCGAAACCGCCGTTG 1634720 32 100.0 35 ................................ GAGGACTACCGGTGCTCGGAAAACGGCTGGGAAGA 1634787 32 100.0 34 ................................ GACAAAATTTTTGCGGACATCCGCCGCAATCTGA 1634853 32 100.0 34 ................................ ACGGCCCTGAACGATCATGCCGAAGTCGACATGG 1634919 32 100.0 34 ................................ ACTTCGTCCAGCGAACGGTCGGAAAGCACTTTCC 1634985 32 100.0 34 ................................ GGCATGTGGGACTTGTACGAAGACCCGAACGCCG 1635051 32 100.0 34 ................................ CCGACGTGTTGCGGCCTGTACGGCCATTACCTCA 1635117 32 100.0 36 ................................ AACAGCAAGTACGTCTACGTCCACAACGCGCTGGAC 1635185 32 100.0 34 ................................ AAGGCTGATTTCGGCGATGTCGCCCACGGCGTAG 1635251 32 100.0 33 ................................ TGGCCGACCAGGCCACCGACCTCGCCATGGTCG 1635316 32 100.0 34 ................................ ATAGTCGATATGGAAGACGCCGATCCGGCGCGCC 1635382 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ==================================== ================== 89 32 100.0 34 GTCGCCCCCTGCACGGGGGCGTGGATTGAAGC # Left flank : GCACTGCGAGAACTGGGGGCAGCGGGTGCAGTATTCGGTTTTCGAGTGCGTGGTGGACCCGGCCCAGTGGGTGGCGCTGCGGGGGAATCTGGTGGCGTGCATGGACCCGGGGAAAGACAGTCTTCGGTTCTATTTTCTGGGAGCCAATTGGAAGAATCGCGTTGAGCATGTGGGGGCCAAGCCCGGCTATGATCCGCAGGGGCCATTGATTTTGTGAACTGTTGGTCCGGGGTGGCAAGTGGGCAGTCCGTGTCCGGCAAAGTTCCATGCGCGTCAAGGATCGTTGATGTCGCGGGTATGTCGGTGCCGCCCGTTTGTTCGTTTTCGAGGACCCGGAGCGCACAGTGTTTTCCGGGGAGGTGCTCGATTTAGTAACATAATGATAACATATGTTAAAATTTACTTGTTTGAATGAGGCCGAGTGTTGTTTGTTGGTTTTGTCGCCATCCTCGAAACGCGGCTGGCCAACTGAGCAATAGCGGGGTATTCTCGGCCCTACA # Right flank : TGGACTCTGGCCCCTCTGCCCAAACGGGCTGGCGGAGTGCGTATGTCTAGATGATTGCTGCACCCAACTCTGGGGCTACCCTCAAAATGTGACTGGTTCGAAGATGCCCGACATGTCACGACAGTGGGTTTGGGGGAGAGAAAGAGCGGCCAAAAGGTGAAGCACGGGTTAAGATTTACCGAAAATAATGAATTTTATTAAATAGTAGAGTACAGCATTGGAGATGGAGGGCGAAATGCGGTCAATCCGGGGTGAAGGTTTGGCAGGTTCTTGAGGTTTTGTCCCAGCCCTCAAGACTATCTTATCTTCCTCACTGTTCTTTTTTGTCAGCTCCTTAAGAAAGAACCGTCAAAACCTCAGAAACCTATGCTTCGCCTGCTTTGACTTGGACGACCTGCCAACTGGCCATATTCGGGCCGGGGACTTGGACGAGCCGCAACCCATCGACGACACGGCCTTTATGCCGTTTTAGCCAGTGGCCCAGGCGGCGCGCGTTGACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTGCACGGGGGCGTGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //