Array 1 183974-185376 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCMW010000003.1 Escherichia coli strain PE01_657 .PE01_657.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 183974 28 100.0 33 ............................ ACCCCACCCACTTACACCCATCTCATCCACAGA 184035 28 100.0 32 ............................ AGTGGAGGCGCTCCCTGATGTGGCAAGCCCGT 184095 28 100.0 33 ............................ AACCACCTGCAAGACGGTTTTTTGTTGTTCACA 184156 28 100.0 32 ............................ TTCTCAAGGATGACGAGAAGCGAGAGGAATTT 184216 28 100.0 32 ............................ GAACGTTAGTGAGCGAGTGGGCGAGGAAGCGG 184276 28 100.0 32 ............................ GTGAAGCGTTGGCGAGGTGTCGGGGCGCAGCC 184336 28 100.0 32 ............................ TTTTGGGGATACCTGTGTAAACCTTGAATTCT 184396 28 100.0 32 ............................ TGGACCAGGATCGCTGTATACGCAGTGCTTTT 184456 28 100.0 32 ............................ AATAATTGTGCTTCTGCTAACTCCAAGTTTTT 184516 28 100.0 32 ............................ TTGAGCGCTACCGGAAACCGTCTGGGGAGAAC 184576 28 100.0 33 ............................ CTGGTGCTTCCTCGCTCATTCGCTCGCTACGCT 184637 28 100.0 32 ............................ TGTCCCGATTTCTGCGAGTTTGTGTTACCGGA 184697 28 100.0 33 ............................ AGAACGACCGCGCCGCCACGGTTCCGGCTGCGC 184758 28 100.0 32 ............................ GCTGGCTCTTTTCCAGAACTAAGAATGCGTTC 184818 28 100.0 32 ............................ ATGTATATCGGGACTGAAGAGCAGCGAAAAAA 184878 28 100.0 32 ............................ ATGTATATCGGGACTGAAGAGCAGCGAAAAAA 184938 28 100.0 33 ............................ TCAGAAAATCGGGACAGGATGTGCAAATGTAAT 184999 28 100.0 32 ............................ GCCTCAAAATCCCTTGCGTGTTTTTGCTCCCC 185059 28 100.0 32 ............................ ATAAAGATAATAACACAATCGTGTCTGGATTT 185119 28 100.0 32 ............................ GTGGCGCTAGCAATGAGATTTGCGGAAAAAAG 185179 28 100.0 32 ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA 185239 28 100.0 32 ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA 185299 28 100.0 20 ............................ CTGAACGTTGAAGAGTGCGA Deletion [185347] 185347 28 78.6 0 CC..................A...C.CT | T,C [185365,185369] ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 194436-196085 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCMW010000003.1 Escherichia coli strain PE01_657 .PE01_657.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 194436 28 100.0 32 ............................ TGTTGGCGCTCCGGCGCTGGCCTGCGTTCTGT 194496 28 100.0 32 ............................ TCCCAACCCCACCCACTTACACCCATCTCATC 194556 28 100.0 32 ............................ AATACGAAAAGGCAATGTGTATTTTTTTTTCA 194616 28 100.0 32 ............................ CTTATCTTCACAATTCATATATAGATTTATTC 194676 28 100.0 32 ............................ TGTCTGCCAGTGGAGGCGCTCCCTGATGTGGC 194736 28 100.0 32 ............................ ACAAACGACAGACAACAAAGACATCAATTAAT 194796 28 100.0 32 ............................ TGAGATACTAAACCTTGTATATCTCTAAGACC 194856 28 100.0 32 ............................ GTTACGAATATTAAAACCCGCCAATAGATTTG 194916 28 100.0 32 ............................ AAGTGGCAATACGTTGTGTGTGCCGGTATTAC 194976 28 100.0 32 ............................ TGCTTCAAAGATTGAGAAGGAGACGAGAATGT 195036 28 100.0 32 ............................ TAGCCAAAATTTTTTGGGGTGTCGGGGCGAAG 195096 28 100.0 32 ............................ AGTTACCTTCGGAAAAAGAGTTGGTAGCTCTT 195156 28 100.0 32 ............................ CCAACGACAAAACCTGTCGAGCCTTCCCGCAA 195216 28 100.0 32 ............................ CCAACATTTCGAATGTGTCACCTCAGCGGCAA 195276 28 100.0 32 ............................ AACCACCTGCAAGACGGTTTTTGTTTTTCACA 195336 28 100.0 33 ............................ GGACGCGGGACACTGACCACAGGCAGCGTTTAT 195397 28 100.0 32 ............................ CATTCCGGACTGGCATCAATAGCAACCGGAAT 195457 28 100.0 32 ............................ GGAACCGTGGCGGCTCGGTGGTTCTAGAGATC 195517 28 100.0 32 ............................ TTGTTGCGTGTTGTCGCATCCAGGATGCGACA 195577 28 100.0 32 ............................ TTCAGCAGCTCTCGAACACGTTCCCAACCTTT 195637 28 100.0 32 ............................ ATGCGGTTGGTAGGTGGTCGTAGACCGTCAGT 195697 28 100.0 32 ............................ GTTCCGTATACCAGTGATATGCAGAAGGAACA 195757 28 100.0 33 ............................ AGGAGCATTGGCGGAGGGAACGCGAGCGCGGGT 195818 28 100.0 32 ............................ GAATCTCGGCGCGACGGCACCCGCCACCGGGG 195878 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 195938 28 100.0 32 ............................ CAGCGGGGTGATTGAATATTTTGGCATCAGAC 195998 28 100.0 32 ............................ TTTCTGCTGTTATCGCCGGGTTGCACGAGTGC 196058 27 92.9 0 .......................-C... | T [196078] ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //