Array 1 4308-74 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAYB01000015.1 Legionella pneumophila strain SH135 Scaffold13_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4307 28 100.0 32 ............................ TCAATAAAAACTGCAATAACTTTTCATTGCCA 4247 28 100.0 32 ............................ CCAGATTGCCGAAACTTTCCAGATGTCTGACA 4187 28 100.0 32 ............................ AAAACCATATGACGATGCGAAGCTTTCTTCAC 4127 28 100.0 32 ............................ TAGAAGTGGACTGGGAACAAAAGGACTAGTGT 4067 28 100.0 32 ............................ TAGCTATCAAACAAATGGCTCTGCTGCTTTAG 4007 28 96.4 32 A........................... ACAGATTGAATTTAACGTAATGGAAGCGTATC 3947 28 100.0 32 ............................ TAACGGGAATTTAGAACATGAAGATTAAAATA 3887 28 100.0 32 ............................ ACAACGGGAATAAATTTGATTACAAAAAAATT 3827 28 100.0 32 ............................ TGATAAGCGATAATTTTGCTTATAAAATTTCT 3767 28 100.0 32 ............................ ATTCCCATGCTAATTTATTGAATAATATAAAA 3707 28 100.0 32 ............................ TCTGGCTTGTAAGGCTTTAAAATTGAAGCATC 3647 28 100.0 32 ............................ TGCTAAACACTGTAACCAAAGCTCATCATCTG 3587 28 100.0 32 ............................ ATACTATAAATCTGCTCCAATGCGTCAGCTAT 3527 28 100.0 32 ............................ TTCTTGCCAAAAACATGTGGAGTGTAGATTAT 3467 28 100.0 32 ............................ GAAAAGATAATTGATTGCTTGCAACATTTAAA 3407 28 100.0 34 ............................ TGACATATAGATTTCGCAGCATCAGCATAACTTT 3345 28 100.0 32 ............................ TAACACTTTAACCATTCTTTCCCACGCATCTG 3285 28 100.0 32 ............................ ACTTCCTGCTTAGGTCGAGCAAAAAAGTTTTG 3225 28 100.0 32 ............................ CCACAGGTATTGTTTCAATTGTATCGGACACG 3165 28 100.0 32 ............................ TTGCGAATAAGATGCATCATAAAACTTGCCTG 3105 28 100.0 32 ............................ AAATCCTCACTTTTCAATTTCTTATTTAATAA 3045 28 100.0 32 ............................ TGAAACTCACCATTTTTTAATAAAGGTTGGTT 2985 28 100.0 32 ............................ TAAAAAGCATGTTTTGTTAAAATGAGGAGATA 2925 28 100.0 32 ............................ ATTTGCATAACCAGTATCCGCAGGACTAGTCA 2865 28 100.0 33 ............................ CGATTGGGTAAAAGAAGTACCAGAAGGCTATCA 2804 28 100.0 32 ............................ TTGCAGCCAAATCAAATTTATTATCGTGAGCC 2744 28 100.0 32 ............................ GCATGGGCACCGAAAGGAACAGCAGACATTAC 2684 28 100.0 32 ............................ TATAAGAATTACTGCTTTAGCCCAGCTTATTG 2624 28 100.0 32 ............................ TAAAAGATTTTTATGTGGTAACTGTCATTAAA 2564 28 100.0 32 ............................ GATAATGGGTTTGCTCGAAAAGAAGATAATGC 2504 28 100.0 32 ............................ GGAAAATTGTTCCAGCCTCTTCGTTTCTAAAA 2444 28 100.0 32 ............................ GTTACCGCAGCACCTAAATTGAATTCTTGTTT 2384 28 100.0 32 ............................ TACGCAGGTTGCTTCTTTGGTTCATAATAGTC 2324 28 100.0 32 ............................ TAAAGTAGCTGCCAGCATAGGATTAATACCCG 2264 28 100.0 32 ............................ TGATGATTCTACGGATTATTTAGTTCCCACGA 2204 28 100.0 32 ............................ TATTACTGAGGCGGGGAAAAGATAATGGCAAA 2144 28 100.0 32 ............................ TATCGCGTTTATTATGTGCACTTTTTCAAACT 2084 28 100.0 32 ............................ TAACGTAGACACACTAATAAAAGCAGGTAAAA 2024 28 100.0 32 ............................ AGATCCGGGCGGAGAAAAAGGAGCTACTAAAC 1964 28 100.0 32 ............................ AATTCTCAGAAATAAATAAATGTTTATTTATA 1904 28 100.0 33 ............................ GGTAGACACTGGCCTTTTTAAATCCAATTGGGT 1843 28 100.0 32 ............................ ATTAAAAGCCTTGCTGCTGCATGTAGTCTATG 1783 28 100.0 32 ............................ AAGAAACCGGGGAAGTGAACGACGCATATCGC 1723 28 100.0 32 ............................ TGCTGAATTGCGCGTGAAATTCTTTCTGATAA 1663 28 100.0 32 ............................ AATCCTCAGCCCAATGATTTTCAGCATCAATT 1603 28 100.0 32 ............................ AATCACAAGTTTACGCCCACCTAAAGTTTTTA 1543 28 100.0 32 ............................ TATGACCTCCAATCTTCTTTCATGGTCATTAT 1483 28 100.0 32 ............................ TTATGATACGCAGGGCAATATATTGCGTAGAG 1423 28 100.0 32 ............................ TTGGGAAAATTCCCATATTGCTTTTGCACCAT 1363 28 100.0 32 ............................ AGCGTGACAAATTAATCAATAAGTACAATAAT 1303 28 100.0 32 ............................ TTGAAGAGTACATTGGATATTCAATTAGTGCT 1243 28 100.0 32 ............................ ATTGATTCATTAAGAGCTAATTTAGAGCAACC 1183 28 100.0 32 ............................ TCCTCCTAAGCCTGGCGCGCCTAACAATTCTA 1123 28 100.0 32 ............................ TTACCACTTTTGGTATCATCATGTATCTGGAT 1063 28 100.0 32 ............................ TCATAAGGCTCTACCTCATCAAGTTCGATATT 1003 28 100.0 32 ............................ AATATGGATAAGGCTTAAATGGTCTGGTGCCC 943 28 100.0 32 ............................ TTAGGGGATTGTATCGCCCCTGGCGACGGATA 883 28 100.0 32 ............................ ATCATACTTCTTTTATCAACTTTTTGTGTTGC 823 28 100.0 33 ............................ ATTATGGATGCTGTTGCAAAAGGCGAGCTCACG 762 28 100.0 32 ............................ GCCTAAAAGCCGAGGCGGACGTGAATTTTTAT 702 28 100.0 32 ............................ AATTAATGTTAATCCTGTACCTCAGACTAGTT 642 28 100.0 32 ............................ AATTATCCCAAACAAGACGATACGGAACAGCA 582 28 100.0 32 ............................ GCTTGCGCCATGCGCTTAACTATTGCCCTCTC 522 28 100.0 32 ............................ ATACGCACAGCTTAATGAGTGTTATTGGCGCG 462 28 100.0 32 ............................ TACAATCTTGTTTAATGATGAATTAGTCAATG 402 28 100.0 32 ............................ TCTATCGTTGGCCTATGTCTTCCGTTAATCAT 342 28 100.0 33 ............................ TTACAACATCGGCCGCCGCGACGGGAACAGTTC 281 28 100.0 32 ............................ TATGAAAACGAACGACGTGAAACAGCGTAGGA 221 28 100.0 32 ............................ TTACCACTTTTGGTATCATCATGTATCTGGAT 161 28 100.0 32 ............................ AATAGAGACAGCCAAAAAGAACTGAAATTTGA 101 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 71 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACTCCTTGACAGAAGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAAGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAACGGGCAAAGACACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAATTACGGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAGAACAAGGTAAATTCCTTGAGTTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTGTAACTATTTTTTTAAGATTTATATTACA # Right flank : AAATACGGCGAAATAGACGAAAGTGTCGTTGCTGAATATAAACTGATCCCCTTTGCCGACTGAAAATTGATCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 71-1541 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAYB01000028.1 Legionella pneumophila strain SH135 Scaffold24_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 71 28 100.0 32 ............................ GTCTTCGTGTGTAACCTCGTCTTTTTCGTCCT 131 28 100.0 32 ............................ CTATGAAGACGGTCTGCACGGAGAACTCGTTA 191 28 100.0 32 ............................ TGTAGCGGAATCAACGCCGTACGCCTCTGGTA 251 28 100.0 32 ............................ GATCAATCAGATAATCCACAAGACTACATTCG 311 28 100.0 32 ............................ TACGCCTCCGCTTGACGACTTTAAGCCCAAGG 371 28 96.4 32 ....................T....... TTATGTGCAAAAGGGCGGTAAGGCATGGCAAT 431 28 100.0 32 ............................ GCAACAAAAATGGCGCTAGAGGGCAACGAAAA 491 28 100.0 32 ............................ TATCGTCAACAGAGTCAAAGTATCGCCAGCAG 551 28 100.0 32 ............................ ACTTACCCCTCCAAGGGAGGTGGTGCGGACTC 611 28 100.0 32 ............................ AGCGCGTAAAAATCCTATCGAGAGGTCAAAAG 671 28 100.0 32 ............................ GATAACTGGCAAGACACCGCTTTTGCGTGGCG 731 28 100.0 32 ............................ TGTGCTAAAAGTTCCGTTTGCTGTTGCTTTGC 791 28 100.0 32 ............................ GGCGACATAAAGCGAGACAAAGATGGCAACGA 851 28 100.0 32 ............................ TACCAAGGTATTGCTGAAGCAATGGCCACTCA 911 28 100.0 32 ............................ TTTTTCTCCGGCGGAATCTGGATCAAGCCATA 971 28 100.0 32 ............................ GAACTTTCTGCTAGCAAGTCGAGCGATATAGA 1031 28 100.0 32 ............................ TCACGGTCTATTGTGTCGCCCTCAATTTGTCA 1091 28 100.0 32 ............................ AACGGCTTGAAATAATCCTTGGGCATGCTCGG 1151 28 100.0 32 ............................ TCTTCTTGCTCTTCAACAGCTTGCTTAGTCTC 1211 28 100.0 33 ............................ ACTGATTTAACAGCACAGATGGAAGCATTGAAA 1272 28 100.0 32 ............................ TCTCTGTAGTTTTGTTCAAAAACAGGGTATGT 1332 28 100.0 32 ............................ AATACATCACCAATTTGAATATCTCTAATCGT 1392 28 100.0 34 ............................ ATTTAGACGAATTTGTCGCGGCCGATTTAAGTAT 1454 28 100.0 32 ............................ AAGTAAATCCAGACCAGATATACATTCTTATC 1514 28 67.9 0 .............T......TGGGTTGG | ========== ====== ====== ====== ============================ ================================== ================== 25 28 98.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGAGGGATCAATTTTCATCTGGCAAAAGGATCAATTTTCAATCGGCATTGACACGAAAGTATAGACTTGAG # Right flank : GTATTGGTTAAGTCGTATAAGAGGAGTTAAATCGGTATAATTATCCGAAGAACTGGGATGGAAACTCATTAAAGAACTAATCCCTGATATTAAATCTAAAACGGCACATTATGAGCATGCGCTATTAACCAAAGGGCATGCAAGACCCTGTAGGGTAGTTACAACTTATCGTCAGCCCAAAGGGAGAAAAGTAAAGACATCACGAGGAAAAATACCTCAACATTATCCAATGGAAGTTATAGTCAAGCGAATAAGGAGCCTTGGATTTTAGCTACTAATTTACCCTTGGATGTAGGGCCTGTTGATATTATCAATCTCTATTTTAAAAAAATGCAAATAGAAGAATCATTTAGAGACGTTAAAAGTCATCAATTCGGACTGGCGGGGCGGTATCTGCGTACTCATTCAGTTAATAGATGGGGCGTTAAAATGCTTCTTGCTGCTATTGTGGAAATTACTTATTGGGTTATTGGAGTGATTGCCCATAGTCAAAATAAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //