Array 1 34664-34102 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_UGPK01000001.1 Mannheimia haemolytica strain NCTC9712, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
     34663	    32	  96.9	    33	........................G.......	TCGGCAAACAGTCGCAAAACCCTTGCTGAACAC  	
     34598	    32	  96.9	    34	........................G.......	ACCCGCTTGCGGTAAAGCTCTAGGCTCTCACCCT 	
     34532	    32	 100.0	    35	................................	TCTTAAATCGCTATCGCTCTCTTCATCTGCGCCAA	
     34465	    32	 100.0	    33	................................	CAATCAAGGCGGCCATTTCGGGGGTAAATTCGT  	
     34400	    32	 100.0	    35	................................	AGGGATAAGCTCTTCGCCCTCGCTGCATTGCATTA	
     34333	    32	 100.0	    34	................................	GCTTACATCTAGACAGACGAGCAAGTGCTGAAAC 	
     34267	    32	 100.0	    35	................................	ACTGACATCGGCGTAAATGCGTGGAAGATTTTCGA	
     34200	    32	 100.0	    35	................................	TCCGTGTTTGTGGTTATGTTGATGTACAGGCAATT	
     34133	    32	  96.9	     0	.......................T........	|                                  	
==========	======	======	======	================================	===================================	==================
         9	    32	  99.0	    34	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                   	       

# Left flank :   TTGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAGTATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTGTAAGG
# Right flank :  GGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAAA

# Questionable array : NO	 Score: 9.21
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   GCAGCCACCTACGCGTGGCTGTGAGTTGAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.00,-1.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//