Array 1 138840-139722 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAD01000005.1 Cronobacter malonaticus strain MOD1-Md27g Md27g_S7_L001_R1_001_trimmed_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 138840 29 100.0 32 ............................. TAAATTGCACGGATGGCATGCGGGGACGATAT 138901 29 100.0 32 ............................. CAGGGAGGCTGAGGCTCAATATCAGCGCGCTA 138962 29 100.0 32 ............................. TTATCGGCTAATTCAGCCGTTCCGCGTTTAAC 139023 29 100.0 32 ............................. AATTAAGCCGCGAACAGGCGATACTTAACGCA 139084 29 93.1 32 ........T...A................ CGCACCACTCTTCAACACCTACGGCCAGCGCC 139145 29 100.0 32 ............................. GAATACACAGACGACCAGTTATACGACGCGCT 139206 29 100.0 32 ............................. CGACAAAATAAAAACAAAAAACTTTGGCGACA 139267 29 100.0 32 ............................. GACTTTTAACAGGGGCGATTGCTCATCCGATA 139328 29 100.0 32 ............................. TGGGCCGTTCAGCTCCGCTCTTACGTCCTGAA 139389 29 100.0 32 ............................. ATTAACTCCATATCCTTACCAGTTCTTCCTGA 139450 29 96.6 32 ........T.................... CCAGGAAGACATGCTCGACCAGATTATGCGCG 139511 29 100.0 32 ............................. GCTGGGCCTGTATGACCTGCCGGAATACCAGA 139572 29 96.6 32 ............A................ AACTATCTATTTCCTGATAAATGGGGGATTTA 139633 29 96.6 32 ............A................ AACACGTCGTCGTAGGCTTTTCCTGGCCACCA 139694 29 93.1 0 ..........G..............G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : GCGGCAGCGTCAATACAGACTTCTTTTGAGAGCCTGTTCTTCACGCCTGTCAATCGCCGCCCCATTTCCCCTCACATTCTTCATCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAACGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 166442-167263 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAD01000005.1 Cronobacter malonaticus strain MOD1-Md27g Md27g_S7_L001_R1_001_trimmed_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 166442 29 100.0 32 ............................. CGTTTTTTCATCAACTTACAATTGATTAAGGA 166503 29 100.0 32 ............................. CCTGTGCGCATAACGCCGTAGTGATCAATGAT 166564 29 100.0 32 ............................. AAATTCTCCAACGCTTCTCAGGTGACGTCACG 166625 29 100.0 32 ............................. CCAATCGCCGCAACGTTCATTATCGCGCTGCG 166686 29 100.0 32 ............................. CGCTGGATAATTTCTCTCTTGTTCCTGGAAGC 166747 29 100.0 32 ............................. CAGACCGCGTACGACGGGATGCCGAAAATCAG 166808 29 100.0 32 ............................. ATCTGGCAGGAGAGCGGGGGTAATCATTACGG 166869 29 100.0 32 ............................. CCGTCCCAGGACATCCCCTCGGTGTGAGACGG 166930 29 100.0 32 ............................. GTGCCGAATTACTGCGGCTGGCGCGGCTAGGC 166991 29 100.0 32 ............................. ACGCAGCGTTTATCGAGCGACTGATACTGCGA 167052 29 100.0 32 ............................. ATAAAAAAATAATTGATGAAATAAATGCTTTA 167113 29 100.0 32 ............................. AAGTCTATCTCGGTTTTTCACCCGAAATAGGC 167174 29 100.0 32 ............................. ACGCCGAATACGCTGCGGCAGACGCGTGGCAG 167235 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 33 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAAATGATCTGGCATCAGATAAATAAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATCATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATCCCGGTGGATTTGGATGGCCTGAGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAGCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GGTATATCAATAACGTGGTTTATTGAATATGTGCAGGAGCATTATTTTATATGGCAATATATAAAAAACAATTCTGAGTTGGGGTATAAAGATAACGGCAATGCTTAAAGAATTAAAGATTATTACATCGCTTCTATTTTTGCTGATTATATTTATATGATTTTTATTGCTGGTTTTTATGTGGGTTAACTTAATTTCAAAGTTGAATACAGTATTTATTAATTTGTGCATGTAGAATTTATATGTTCTTCATTTAATAGGACTTTATAAATGACATGGGATAAATATGCAGCAATACGTCATGCACAGGATCGTGCCTACAGTAATAGCTATCATAAGTGCGAGTTATTTGTTAAAGAAGCTATTATTGCTGGTGGGGTTGATATACATCCAACGCCTTCTGCAAAAGATATGGGTAAGGCATTGATTCAAGCTGGTTTCTATGAGGTTTATGGTGAGCCCGTAGCTGGTGATGTCGCTGTTATTAGCTCGATCCCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //