Array 1 279-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000001.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 278 30 100.0 37 .............................. TCCACCGATTGGGGTCGTTACTTCCGGTTACCTGCCG 211 30 100.0 36 .............................. CCCATAACATATCATTCCATCGACCCGACTACGATT 145 30 100.0 36 .............................. TTTGGTCATGTCCAGGGACACATCCACGCGCCGGCG 79 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : | # Right flank : CGCGGCCATTGGGGGCAAACCACTATATGTGCTGGAGATGTTAGCCTACC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 229-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000102.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_262, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 228 30 100.0 35 .............................. GCGGCCATTGGGGGCAAACCACTATATGTGCTGGA 163 30 100.0 38 .............................. CTGGGTAATGCCGCCAAGGTTGGAATTAGCCGTGTAAA 95 30 100.0 37 .............................. TGCCGGCCGCAATTTTTCCGTATATGCCGCGCTTTGC 28 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 98.3 37 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : TGAGGAATTGAAACTGCT # Right flank : A # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 1-165 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000114.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_285, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1 30 100.0 39 .............................. ATGCTATAAGCGGGGCTTATTATTCGGCGGTAAATCAGA 70 30 100.0 36 .............................. AATCCCGAATCACCCAAAAACGGCAGGTGTAATAGA 136 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 3 30 100.0 38 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : | # Right flank : CCATAAAAATAGGTGCCGTTGGGGCAACTGCGGTGGATGTTAGCCTACCTA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 361-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000126.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 360 30 100.0 36 .............................. TAAGCTGCTCGTAAGTCTTGCGGAATTTCTCGTGGA 294 30 100.0 38 .............................. TCGTCTATTGTGGTTTCATGTGGGAAGGTGACGCAAAA 226 30 100.0 37 .............................. AATGGCAAACCATGTAGTGCAACCCAGCAATGTGGTG 159 30 100.0 35 .............................. AAGATGCCATGATTCCGGTACGTTCCCTCGAACAT 94 30 100.0 36 .............................. GCAGAATGGGAGAGGCACAGGCAAGGGCGGGGCACC 28 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 98.9 37 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : | # Right flank : A # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 4-824 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000117.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_289, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4 30 100.0 38 .............................. AGCGAGAAGGGTTGCACATGGGAACCCCCGGAGCGAAA 72 30 100.0 36 .............................. TCCTTTCCACCAAGAAGTAATATGCTTTCCGTGGGC 138 30 100.0 37 .............................. TACTTCCTCGTGCGTATACCCTTCGGCATTGTACCGC 205 30 100.0 36 .............................. TAACACTTCCACTGGCCGTTTTTGCTGACGTGAAAC 271 30 100.0 36 .............................. GCAACACTGAAGGGGTTAAACGGGACGCTTTTGGCG 337 30 100.0 36 .............................. TCCACCACGTATTACCACAACCTTTCGATTACAAAA 403 30 100.0 36 .............................. ACCGTTTATCTTGGCTATATCGATCCAGCGAAGAGG 469 30 100.0 36 .............................. AAACCCGCGTTCCGATTGGGTAGCTGTTCTGCAGGC 535 30 100.0 35 .............................. CGGCATCCGCCTCTTACGGCCTTTATGGGGGCCAT 600 30 100.0 36 .............................. AGCTACAATGCTATGGGTGCGGCTTTGGGCAACGCT 666 30 100.0 36 .............................. TCGAAACTCCTGGCGCAGCCGGATATCTACCTGACA 732 30 100.0 35 .............................. GGGCATACAAGTCCCCTTTCCCGCTCATGCCGGGC 797 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.5 36 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : ATTG # Right flank : | # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 227-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000134.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_316, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 226 28 100.0 38 ............................ ACCCCTTCGGAAACCAAAGCAAATATCCTCCAAGGATA 160 28 100.0 39 ............................ ACCCAGTCAGTGGGTAGACTTCAACCTGACATATGATCG 93 28 100.0 37 ............................ ACTTCCACCGTGTCCCGGGTGGCAGCATGATAATGAG 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 4 28 100.0 38 GATGTTAGCCTACCTATGAGGAATTGAA # Left flank : T # Right flank : A # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1-227 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000138.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_320, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1 30 100.0 35 .............................. GGTGTTTATGATATTGATTTTAAAATGGTTCCTGG 66 30 100.0 36 .............................. CATAATCATTATCATAAAACTTATCTAAAGTACAAG 132 30 100.0 36 .............................. TGAATAAAGATAATTTATTATATACAATTAGACAGA 198 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GATTTAATCTAACCATACTGGAATTGAAAC # Left flank : | # Right flank : ACGTCTAATTCTGTATTAGGAACTTCTGGAGGAATTGGATTTAATCTAACCATA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTAATCTAACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 55-548 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000140.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 55 30 100.0 36 .............................. CGGCCAAGGCGGCCTGCCTGGCCGTGTCACCCAAGG 121 30 96.7 36 T............................. GCGGCCTTCTCCAGGGCACCAGCCAGGGCCGTCAAG 187 30 100.0 36 .............................. CTTCCTCGACCGAGTGCAAGCAGTAGACCGGAAAGC 253 30 100.0 35 .............................. TCGGCTACACAACATTGGAGCTGAAATACCAAATG 318 30 100.0 38 .............................. GTAATATAGCACGTTCTACACTTTTCCATTTAACATCC 386 30 100.0 36 .............................. CCTGCTTAATATTGTCATCAGTCTGGCGCTTGAGAA 452 30 100.0 37 .............................. TCGCCAAGCTATCTGCCGCCTATGAACAGCGGGTATT 519 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 99.6 36 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : CTATGAGGAATTGAAACCGGCAGTGCAGGCACGCCGTCGGCTGCACGATGTATTG # Right flank : GTCAAAATCCGTAACATGCCCAAAGATGTCCAATTCG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 1 6-669 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000141.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_325, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================= ================== 6 30 100.0 35 .............................. TAACCAACCCCAGCGCACAGGCAGTTATACCCGGC 71 30 83.3 73 .................A....CG.C...G TTCCTTTTCAATACTATATGCAGTAGCCGACAAGCGGTAGACTCCCTATATATTGTGGCCTAAGAGCGACTTT C,TC [88,93] 177 30 96.7 36 ..C........................... GCGTCTTGCCCCAGACCAAATACCTGGGCCATCTCG CCGTG [184] 248 30 100.0 37 .............................. TGTACTGCAACAGGAAAGATGTCGCGGGCATATGCCC 315 30 100.0 35 .............................. CGGCGATCCTCAGTCTGGCCGCTGTTGATATGGGT 380 30 100.0 35 .............................. ACGAGGCCCGAAAAGCGATGGATCTCCCCGGGAAG 445 30 100.0 35 .............................. TTACGACACGGAAGAGGGCCATCGCATGATGGTGA 510 30 100.0 36 .............................. TGAACCAGGCGGCCAGCATGAGCACCAGTACCGCGC 576 30 100.0 36 .............................. CAGTCTATGACCTGGAAGCGCATGACTGGAACCAAA 642 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ========================================================================= ================== 10 30 97.3 40 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : CCATTG # Right flank : | # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 1 218-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000145.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_333, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 217 30 100.0 36 .............................. TATTCTTCCTCTCTTTTCACAATACCTTTTTTTATA 151 30 100.0 36 .............................. AGCCTTCCCAACAGAGTTTTTCTGCCACTTGTTTAA 85 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTTTTAGCCTACCTATGAGGGATTGAAAC # Left flank : GTTCAGGTCTATAACAGCATGACTGGAT # Right flank : CCTCTTGTATTGCCATAGTTTATAATATTCAAGCTATGAGTTTTTAGCCTACCTAT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 293-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000151.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_341, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 292 28 100.0 37 ............................ ACACCAAAAACACTATCAAAATCGAGTGGAGGCATGA 227 28 100.0 39 ............................ ACTCCGGCAAGCGAACCCTCCAAAGCTGCGTGGTAGAAA 160 28 100.0 38 ............................ ACCATACAGGGCACTCCCGGCAATAGAATGTCAAAAGC 94 28 100.0 38 ............................ ACGCAATAGGACGCCGACACTGGAAGTCCTTTCCCGTA 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 5 28 100.0 38 GATGTTAGCCTACCTATGAGGAATTGAA # Left flank : AT # Right flank : A # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1-161 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000155.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_349, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1 30 100.0 35 .............................. AACTATAAACTTAAAGCATTAAGAGCAGAATACAA 66 30 100.0 36 .............................. AAAAATATCATAATGATAAAGACTTGAATATGTTAA 132 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GATTTAATCTAACCATACTGGAATTGAAAC # Left flank : | # Right flank : TCTTTTAAAAACATATATCTATTGCAGTGATTATCTGATTTAATCTAACC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTAATCTAACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 6-233 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000154.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_348, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 35 .............................. CGTGTGGGATAAAGCATGAAGGCCGCCCTTTCGGG 71 30 100.0 37 .............................. ATGAACAGATATTTAGTAGAGTTCACGGGAATGGTAT 138 30 100.0 36 .............................. ACATTCTGGCGCAGGACTTCAATAATAGACGCAAAC 204 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 36 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : CCATTG # Right flank : ACTGCTGTTTCATATTGGTAACGTTACCTAGATTTTGAAGATGTTAGCCTACC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 1-227 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000156.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_351, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1 30 100.0 35 .............................. ATGGCGATATCATTAAAGCCATTTCTTCAATCATA 66 30 100.0 36 .............................. TATTATACTGGTGTTAGATTATTGTTACATAATTCT 132 30 100.0 37 .............................. ATATTCAATGTAAGCAAAAGTTTTGAAAGGCAACCAT 199 29 96.7 0 .............................- | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 99.2 36 GATTTAATCTAACCATACTGGAATTGAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTAATCTAACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 1-229 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000159.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_362, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1 29 100.0 38 ............................. CACAGTAAATGATAATATTCCAAAAATTGCGGATATTA 68 29 100.0 38 ............................. CATCTCAAATGAGTATCATTTAAAAGGTCATAAGTATA 135 29 100.0 37 ............................. CAGAGGCATGTTTGTATGCCATCATTGTGACAACCGC 201 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 38 GATTTAATCTAACCATACTGGAATTGAAA # Left flank : | # Right flank : | # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTAATCTAACCATACTGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 1-291 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000162.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_370, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1 30 100.0 36 .............................. TTTAAAGAAGGCTTCATAATAGTCCTCATTTAATTC 67 30 100.0 36 .............................. GTTAATAATTTTGCTGTTACTTTTAGATTTTTAAGC 133 30 100.0 35 .............................. CTAGCTGTACGTTGTACGTGTAATCCAGTTATAAG 198 30 100.0 35 .............................. AAAAATACGGGAAGACTTAGAGAAGGCCTGAAGAT 263 29 96.7 0 .............................- | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 99.3 36 GATTTAATCTAACCATACTGGAATTGAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTAATCTAACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 490-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000200.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 489 30 100.0 36 .............................. ACGCTCGAGTGTGGCAGATGCAGCGCATGGCAAACC 423 30 100.0 37 .............................. TGGTAACAGAAGTGCATTGCCCATTTGCCGCATAGGT 356 30 100.0 36 .............................. CCCTGATCGTCGTACATAACCGTATTCCTGCCCCAA 290 30 100.0 36 .............................. CGGGTTAAGCAGCACTCTTATTCGCCCCCGGTCCCG 224 30 100.0 36 .............................. TCAAGGCTCCCGCGCTTATGCCGGATACTGGATTAA 158 30 100.0 35 .............................. GAGAGACAACTAAAGACAGGAGCGGCAACGCTGGA 93 30 100.0 35 .............................. CCAGAGACGCCCCCGCTACCTCCGTCACGGCTCCC 28 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 99.2 36 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : | # Right flank : A # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 475-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000026.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 474 30 100.0 35 .............................. CAATCAGACTCCAATACCTCTATTTCAGTCCCAAA 409 30 100.0 36 .............................. GGTGATCTAAATCCACATTATCCGGTACCTTCCAAC 343 30 100.0 36 .............................. GGTAATTCCACGCGCAAAACGGCGCATGACCCGGAC 277 30 100.0 35 .............................. GAGAAACTATTCCAGCAGAAGACGCTGGGGAAATG 212 30 100.0 35 .............................. TACCGCTGAGTTAGCTGACCGAAGATGGAGCATTG 147 30 100.0 36 .............................. TAGGTAGGCTAAGTATATATGTATGTCACCACCAGG 81 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 100.0 36 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : ATGAGGAATTGAAACGATTCGAAAGTTGCACCTTGAATCACCGGCTTTC # Right flank : CAGCATAACTCCGCATAGTTCCGCAACATTATGACAGGATGTTAGCCTACCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 2-163 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000032.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2 30 100.0 37 .............................. TAAACACTGGTATAGGTGAAACAGCGGGAACGGCGCT 69 30 100.0 35 .............................. GCCTGAAAGCAAGCCTGATCGGCGCCTCGGGCGGG 134 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 36 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : TG # Right flank : TTGGACACCCATCCGGTATCAGCCACGACATTGCCCAGATGTTAGCCTACCTA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 227-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000061.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 226 30 100.0 37 .............................. CAAAAATGTGTCTCTAATAATTCCAGTACCATCACTA 159 30 100.0 36 .............................. ACCAGGGGTCTAGCCGCCTCTGCAACTACAATCTCC 93 30 100.0 35 .............................. CCGGGTAGATATAAACAGCTGGAAAGGCCGGGAAA 28 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 98.3 36 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : | # Right flank : A # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 22-184 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000005.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 22 30 100.0 36 .............................. ATGATGATGTACCGACCGGGTACCAGGTGCTCATAG 88 30 100.0 37 .............................. CTGTAGCGACTGAAGAACCGGTTGCTGGCTTGGTACT 155 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 37 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : GCCCAAAGATGTCCAATTCGCG # Right flank : ACGGGATTCCCTTTCCGGTGCTCCCAGTGCAATCGGGATGTTAGCCTACCT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 620-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000064.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_202, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 619 30 100.0 36 .............................. CCAAATCGGGAATTGAAACATAGGAAAAGGAGAAAA 553 30 100.0 35 .............................. CGTACGGGCGATGACGGACCTATTACCCTGAGGGA 488 30 100.0 36 .............................. ATGGTTGTTCCTGCCAAGCCTTTCAGGACATCCAAC 422 30 100.0 35 .............................. CCAGTCAGTGGGTAGACATCAACCTGACATATGAT 357 30 100.0 36 .............................. TGGGGCGTAAACCGTATTTCTTGACGGAAGCGGCAT 291 30 100.0 37 .............................. AACTCAAGGGAAGCGCCAATAAACTCTCCCCATTCAT 224 30 100.0 35 .............................. AGGACGTGATGACATACATTCTTAGGTTGGCACGT 159 30 100.0 36 .............................. CAAGTTCCGGAGCATCCGGTGCAAGATGTATTACAA 93 30 100.0 35 .............................. ACTACATACCGCAGGGTATTGAGCAGGTTTTGCCC 28 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.3 36 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : AT # Right flank : A # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 1610-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000070.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_210, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1609 30 100.0 35 .............................. CTTATACCTATGGATATGGTGACAAAGGAATTGGG 1544 30 100.0 37 .............................. CAAGATAGATCAACCCAGCCACCGCGAAAAACGCAAT 1477 30 100.0 36 .............................. TAGCGTGAGCTGTAACCAGAACCAAGACGTTATGCA 1411 30 100.0 35 .............................. CCAGCAGCAATTTCCTTGCGCCATTGGTCCCAGTG 1346 30 100.0 36 .............................. GCGATGTAATCCAGGAGTTCTACTGGAACGGACAGG 1280 30 100.0 36 .............................. TTGCCACACACGCAAACACAGGGGCATCCACTCTTA 1214 30 100.0 38 .............................. TAGTCGGCCAGCAATCCCCAACTTTTGTCCACCTGCTT 1146 30 100.0 35 .............................. CTCCTAGAAACTCTCCGGTCTGCTGCCAGAGATCC 1081 30 100.0 35 .............................. CCGTTCGCGGCCTCCAGAACATCTTCCAGTGCATC 1016 30 100.0 36 .............................. CAAGACCTATGTGACCATCAATTTAAGAGAGCGGAT 950 30 100.0 36 .............................. TACATCCAAAAGGTTTAAAAAATCAAAGTCACCTGT 884 30 100.0 38 .............................. GCCAAAAACCGGCAAACCAGGCATTCGTCGCAATAATG 816 30 100.0 37 .............................. TCATTCACCTCGCCGGCGATGTCCGCCACCATATCGG 749 30 100.0 36 .............................. TTTCACCAGAATGTCAGAGACGAATGGCTAGATAAG 683 30 100.0 35 .............................. CCCCACGGAACCATGAAACTCCGGGCGCAGCAGCC 618 30 100.0 36 .............................. ACCATGAAGTTCTCTACACCAAACACCTTCCCATGG 552 30 100.0 35 .............................. GCTAAAAAGGGAGCGCTTGCCCATGAGCGATTTTG 487 30 100.0 36 .............................. GTACTACAAAGCCGGGGAGGAAAGAGCATGGCAATA 421 30 100.0 35 .............................. CCAGATCACGCCCGGGTGGAGCAGGTATACCATAT 356 30 100.0 35 .............................. TTCGCCGTGATACTCGAGATGTGTTCGATCCCCAT 291 30 100.0 36 .............................. AATCGTATGTTCGCGCTCTTCGTGCTGCCGCTCCGA 225 30 100.0 35 .............................. CCGGGCCAGAGGGAAGCAGTTCCGCACATACGCTG 160 30 100.0 36 .............................. CTCTGCATTTGCGCTTCTTCCAGGAACACCGGGCAA 94 30 100.0 36 .............................. GCGGATTCAGGCGCATCTTGATCCGGTTCTTTCCCA 28 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 99.7 36 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : GCCCAAAGATGTCCAATT # Right flank : A # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 52-879 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000074.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_219, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 52 30 100.0 36 .............................. CCAACGGGCAGGTTTACATGCGGGCGGCTATGGATG 118 30 100.0 37 .............................. CTAGTAATGGTCATCACAAATCCGTTCGTTTCAAAAG 185 30 100.0 36 .............................. GCGCAATCATCTCATATCCCTTTTGCCAAACGGTTG 251 30 100.0 36 .............................. GAGGCATATAAGATGCATGCTATACTTTCGGCCTCA 317 30 100.0 38 .............................. TGCCGGGCATGATGTATGAAACATATGTGCTGCAGGCT 385 30 100.0 37 .............................. TCGGGGTAACGGTGGCCGGGGAGGAGCAGCTCAAAGA 452 30 100.0 36 .............................. GGGGCGAATTCGGATCCTCCTGAAGGTAATGCACAA 518 30 100.0 37 .............................. CAGGAGCAGAATTATCTGTTTCTATACTTCCCGTTAG 585 30 100.0 36 .............................. ATAACGTATCAAACCAAACCGTGGGCACAACCCCGG 651 30 100.0 36 .............................. CCGGCACATTTACGACAGGAGGATGCGCCGAGCTGG 717 30 100.0 37 .............................. CGGCTCCGTCAAAACCACCCTTGAACGTACCGTCTTC 784 30 100.0 38 .............................. TACTGCCACAGGCTACAATAACTAACCTGGTCTTTACC 852 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.5 37 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : TATGAGGAATTGAAACAATGAGCAGGAATATAGCTTTCGCATACCATTTTTG # Right flank : | # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 54-610 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000073.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_218, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 54 30 100.0 35 .............................. ACTGTACAATTTCCGGCCATAGCGAAGCATCACCC 119 30 100.0 36 .............................. GTCAACACCACAACGCAGATGATGGGCTTCTCCCGG 185 30 100.0 37 .............................. ATGGTTTTTAGACTCTATCAGCATCAGGTTCACCACC 252 30 100.0 35 .............................. AAACGGCCGCCTATAGAGCGCACCCGTCCATTGTC 317 30 100.0 36 .............................. TCCAGGCAATGAATAATAGTAGTGCATGGGTAAACC 383 30 100.0 35 .............................. ATCGACACAGCCAGGGGTTTTCATCTTTCTTATCC 448 30 100.0 36 .............................. AAATTCGGCCAGGAGTTTCAAAACGACCCAATGGAC 514 30 100.0 37 .............................. CGTGCCGAGGGTCAGCGACTCAATAAGGTAGTACTCA 581 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : TATGAGGAATTGAAACCCGACACGTATGAAATGCTGACATTGGGGCGTAACCTG # Right flank : TTCATGTGCAGGGCAAAAACACCAGCATTGGAGCCGATGTTAGCCTACCTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 292-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000080.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_228, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 291 31 96.8 35 ..............................A TGTCAGTCAACAGCAGTTTTACATCGGCCTGCAAA 225 31 100.0 35 ............................... CGGTGAGGTGCGCGACGAAGTGGCCTTCACTATGC 159 31 100.0 34 ............................... AAAACTTAGCGATAAACCCGTTCGCTTTGAGTAG 94 31 100.0 35 ............................... TCCTTCGGCAGCATAGTGAGTGCCTGAACACCGAA 28 28 90.3 0 ............................--- | ========== ====== ====== ====== =============================== =================================== ================== 5 31 97.4 35 GATGTTAGCCTACCTATGAGGAATTGAAACT # Left flank : | # Right flank : A # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 51-342 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000082.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_231, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 51 30 100.0 36 .............................. ACCTACCTGCCGCCTATGCCTTCCTCTACTCCGCAA 117 30 100.0 36 .............................. TAGCATGGCCACAAACACCGGGTACGGGAGTGCAGC 183 30 100.0 36 .............................. GCCGTGTAAAGGCATTTGGTCAGCGTTGCCAGATAT 249 30 100.0 36 .............................. TTGGCCCGATACCATTCGAGCGCCTCTTTAACTCCG 315 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 98.7 36 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : ATGAGGAATTGAAACGATTCTGCCCATTACCAGGCAATTGCTTTACCTCCG # Right flank : | # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 1-686 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000088.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_245, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1 30 100.0 35 .............................. GCAGCGCGTCGCGGAAACCGAAGTGCGCTATACTA 66 30 100.0 35 .............................. ACGGAAGCGGCATCCCAGTAAGGATTGCCGCTTGT 131 30 100.0 36 .............................. CCGGCCGCGGCCTCAGTATATCAATTGCAGTTCAGC 197 30 100.0 36 .............................. TGCGGCATGTTGGCCGCATGGATCAGCCGAACCATT 263 30 100.0 36 .............................. TCCACTATTCCCTGGCATGCTGGGGGAAAGTTTTTT 329 30 100.0 36 .............................. GAATACGGCGACGTGCCCAACAACCCTGTTTATATA 395 30 100.0 36 .............................. CAGGTGATTATAACCGGTCCCGTCCGCCTTGCCGCA 461 30 100.0 36 .............................. AAAGGGAATCTGATGAGTTACTTGATGCGCTATTAA 527 30 100.0 36 .............................. TGTCAAGCGGTTCCGATGCGGCATATGTCGGTCAGA 593 30 100.0 36 .............................. TGCGCCTGTGCCGCCGCCTCCAGCGGGCCGATATAG 659 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ==================================== ================== 11 30 99.4 36 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 1-625 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000086.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1 30 100.0 36 .............................. AACGGGCACACCCGGTAAATCAAAACCGGTGCCTCC 67 30 100.0 35 .............................. ATGCCTGCGCAAAGCGCAGGAAAAAGGAGGAAAAA 132 30 100.0 37 .............................. CATTGTGCGCGGTAATCAGCGTACTGGTTACTATGCA 199 30 100.0 37 .............................. CCACCTGGATAATATTTACTCGCTCGCCGTTCCTGTC 266 30 100.0 37 .............................. ACCATCCTAGAGAATGTTAATAGAGTGCCAGTTATAG 333 30 100.0 35 .............................. ATTGATAAGCTGATCATTAACGCTCGGGTGTGGCA 398 30 100.0 36 .............................. AAGGCGTGCAGGAACTGGTAACAGAGTTTCGTAACC 464 30 100.0 35 .............................. TGGCGCCGGGCAAACAAATTGGCTGGCGGGTACAG 529 30 100.0 37 .............................. CCGGCCGACTGGCTCACATACTGAACAATGCCAGCAC 596 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 100.0 36 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : | # Right flank : GCCGATACATTGGACAAGTATCGGCGGGAGTTTGAAGATGTTAGCCTACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 228-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000090.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_248, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 227 30 100.0 36 .............................. TCTATCATTTCAAGTTCTAAATTTTCTTCTAGCATC 161 30 100.0 36 .............................. AATATTGCTACAAATGTTTTTATTGTATTGCTACTC 95 30 100.0 36 .............................. GTGCAGTTTTTCTTTTACGCTTGCAGCAGACGATGA 29 29 96.7 0 .............................- | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 99.2 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : TGGTGGCGGGGGATATAGATAAAATTTTCTATAATA # Right flank : A # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 360-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000096.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_257, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 359 30 100.0 38 .............................. CGGATGCAGAACCAACTCTAAACCGTAAGGCCGTGTCC 291 30 100.0 35 .............................. GCCATGGGGAGGAAGCGCGGCGCGGGCGTTAGCCC 226 30 100.0 36 .............................. CTCGCCTGCTCATCCAGTGGCCGGAATCCTTCACTT 160 30 100.0 35 .............................. TTCCAGTAGTAGACGTTAGCTAAAACCCTCGCATG 95 30 100.0 37 .............................. ATCCCCACATGGACATGAAGCCCAGTGGAGTCGCTAC 28 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 98.9 36 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : CTATGAGGAATTGAAACCGGCAGTGCAGGCACGCCGTCGGCTGCACGATGTAA # Right flank : A # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 6-366 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000097.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_258, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 6 30 100.0 36 .............................. TAACTTACGCCCCAAAGGCGGCGCACGACGACATTC 72 30 100.0 36 .............................. GCGTCATTCGTGGCACATATGAATGCGGGAGAATGC 138 30 100.0 35 .............................. TCAGCAGCGGACGCGCGAAAGTACCGGGGGTACAG 203 30 100.0 36 .............................. CGGCATGAAAAAATGCAGGGGAGGCAGCTGGCAGGC 269 30 100.0 40 .............................. GAGGAATCGGAAGAACTGGAAGAACCGACACCGGCTCCAG 339 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ======================================== ================== 6 30 98.9 37 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : CCATTG # Right flank : | # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 348-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYVF01000098.1 Desulfotomaculum copahuensis strain LMa1 LMA27_trimmed_contig_259, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 347 30 100.0 37 .............................. GATCGTCGGCGCAATACGCGCCGGGGCTGTATCCACT 280 30 100.0 36 .............................. ACCAATACCATAATCAGATGTTCCAAGCGACTATGC 214 30 100.0 36 .............................. ATGAGTATAATCCAGATTCTGAGCGGATTAATGAGC 148 30 100.0 35 .............................. CCTTCCTGCCGTCGTATTCACCGCCCTGAATAACA 83 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 100.0 36 GATGTTAGCCTACCTATGAGGAATTGAAAC # Left flank : | # Right flank : CTGGTACGCACGATAGTTCAACGTTACGTACCTCTCATGATGTTAGCCTACCTA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //