Array 1 5507-6573 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLGX01000042.1 Escherichia coli strain MOD1-EC5716 MOD1-EC5716_42_length_31177_cov_22.0151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5507 29 100.0 33 ............................. TTTTTGCACCAGAACGGATCGCGGTTTGCACGC 5569 29 100.0 32 ............................. AAATTTGCCGGTAATCGGGTGCTTGTATCGCC 5630 29 100.0 32 ............................. ATCAGACCGTTTTTGAAGTGGGCAGGCGGAAA 5691 29 100.0 32 ............................. TCTTTCGTCAATTTTGGCGCTATAAACTTCAT 5752 29 100.0 32 ............................. CGCCCATCAGCACCGCGCAGGATCAGGAAACC 5813 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 5874 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 5935 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 5996 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 6057 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 6118 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 6179 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 6240 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 6301 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 6362 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 6423 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 6484 29 96.6 32 ....................A........ CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 6545 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAAGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 53693-54575 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLGX01000023.1 Escherichia coli strain MOD1-EC5716 MOD1-EC5716_23_length_74924_cov_21.6603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53693 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 53754 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 53815 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 53876 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAATCC 53937 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 53998 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 54059 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 54120 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 54181 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 54242 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 54303 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 54364 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 54425 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 54486 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 54547 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTTTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //