Array 1 1072393-1073887 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079754.1 Klebsiella grimontii strain NY3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1072393 29 89.7 32 ..........................GTA CAGATCTAATTTCTCAACCATGTCGACCAGGT 1072454 29 89.7 32 ..........................GGA ACAACCAGCCTCGCCTTTAAAGCAATAATTGT 1072515 29 93.1 33 ...........................GT GTAAACGAACTATAAATACCAATTCCGCCAGGT 1072577 29 96.6 33 ...........................G. GATACGGGCCTTCTTTCCGGCATCACAAATCGT 1072639 29 100.0 32 ............................. CTATGACGTCATCCTGACTCCAGGCAGGTTGG 1072700 29 100.0 32 ............................. ACTGCCGCCGCCACGACCACCACCACCAGCAG 1072761 29 100.0 32 ............................. CGCTATATCAGAGGTGAAATAACCGCAACGCA 1072822 29 100.0 32 ............................. GAAATTCCGGTCCGTCGCGCGCGCAATATCGC 1072883 29 100.0 32 ............................. CGAATAAACCGGATCCTTTTCGCCCTGCGTCA 1072944 29 96.6 32 ............T................ GCTCGCTAATCAGATAATCCCGCACCTGTCCG 1073005 29 96.6 32 ...........................T. AGTTCAAATCCTTTATGGAGGCGATAGGGACG 1073066 29 100.0 32 ............................. TGCGCCAGCATACCTGGGACGCACAGACAAAC 1073127 29 100.0 32 ............................. CCAGCCCACGAAGTGATTATTTACGCCTATTA 1073188 29 100.0 32 ............................. CAGATAGACGATAGAACCATCACTGCGGGTGA 1073249 29 100.0 32 ............................. CTTCGACAGTCAGACATCAACCAGGCGTTTCG 1073310 29 100.0 32 ............................. TCCTTCAATCGTCATTTCATGCGCGTAGTAGC 1073371 29 100.0 32 ............................. AAATACCTGCAGCAGCGGGTAACGTTCCAGAC 1073432 29 100.0 32 ............................. GTGATATTGTGATTGCCGCGGTGGACGGGGAA 1073493 29 100.0 32 ............................. ATAACGAGGGCTGGAGTTCTGACGACGGTGGC 1073554 29 100.0 32 ............................. TCGAAGCTGTCACACGGTGATCTTCCTTCCTT 1073615 29 100.0 32 ............................. CAGCTTTCCAGAATGTAAACGAGACTGTTTAC 1073676 29 100.0 32 ............................. CGTCTGGGGAATATCATCAGCATTAATTTGGT 1073737 29 100.0 32 ............................. CCAGTAGCGTTTGAGTTTAAGTGTGTACCCTA 1073798 29 100.0 32 ............................. CTCCCGCTGGACGCTTCGACATGTCTGCAAAT 1073859 29 82.8 0 .....G......TC.......G.T..... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 97.8 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GCTAGCTGCTGGTGAGATTGAGCCGCCTCAGCCAGCGCCAGATATGTTGCCGCCGGCGATACCAGAGCCACAGCGACTCGGCGACGGCGGGCATCGGGGGCATGGCTGATGAGTATGGTAGTTGTTGTTACGGAAAACGTGCCGCCGCGCCTGCGAGGACGGCTTGCCATATGGTTGTTAGAGATTAGGGCTGGCGTCTACGTCGGCGATGTTTCAAAACGTGTGCGGGAGATGATTTGGCAACAGATTACGCAATTAGGCGGCGCTGGAAATGTTGTTATGGCCTGGGCGACGAATACAGAGTCCGGTTTTGAGTTTCAAACTTGGGGAGAAAATCGACGTAGTCCGGTAGATTTGGACGGCCTGAGATTGGTTTCTTTCCTTCCCATTGAAAATCAGTAAGTTATAAGTTCTTTAATAAAAAGGAATTGTAGAACATAAGTTGGTAAATTGTTGCTCTCTGAAAATTGTAATAGAAAACAAATATATATATTTAGAGT # Right flank : GGTTTTTTCCCATACGCGCTCCGCATTCAGGGAATGTTCCCCGCGCCGCCATTCTTATTATCCTGTACTTTATTTTTTTACGTCATTATTTAGTGTGGCAAAGTCCAGTTCCAGTCAATACTTGCCAAAATTTTTGGCTCATGGGAACAGTGCGCCGTTTTTAACATAGCGCTTATACAGACGTTTTACCGATGCTGGGTTCTGAGCCCAAATCCAACCCGTCGTGCCAGACGCGCTGCCAGATATGAACCTGGTTGTCGGTGATGGACCGCGCGCTGGCAGCCAGTAGTAGAAACAACGGTATTAAAAAGCGAAAACGCATCATGGCGACAGTCCTTGTTGCCAGATTTTATCGTTAGTCTATTTTGAGGTGGGCTTCTTCTCCGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACTTTCATCACATCGCGTCCGCGATGCTCAATCCGCCCCGGCAGCGCTTTATCAATATACTGCAGGTTATCCAACTGAAGGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1759786-1760302 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079754.1 Klebsiella grimontii strain NY3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1759786 29 100.0 32 ............................. ATTGGCCGCCGGGTTGATTGCCGACTGGACAA 1759847 29 100.0 32 ............................. CCAGCTTCAGCATGCAAGTCCCGCATGCCCTG 1759908 29 100.0 32 ............................. GCGCCGGAAGCAACGTAATGCTGCCAGCTGAA 1759969 29 100.0 32 ............................. GCGTATCAGCTCGGCGGATTTCGTTTTCACTG 1760030 29 100.0 32 ............................. TCAACGCGAAGCGCGACAGATCACCGCCCGCG 1760091 29 100.0 32 ............................. GACTTATAGCCATCGCCCATGTCGAATACCCA 1760152 29 100.0 32 ............................. CGTATGGCCGGCGGATGTGGCGTAGATTGCCC 1760213 29 100.0 32 ............................. GGGCGGCCGGTAGTCGTCCTTTCCAATAATGA 1760274 29 93.1 0 .............T..............A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGATATCGCGGTGTTCTCAAAGGGCAATATTCAGCGCCTGGTCGGCGCGCTGGCGGAGAGCCATCGCCTCACGCTGCATACGCGTTATCAGGTTGACTATATTGAAACGCTTTACGGCCTGGTGCGTTCCCGGCTGGCGGTGGCGATTCTGCCTGAGCTTTATACCACTCACCTTCAGGATCCGGCGTTAAAGGTGGCGCAACTTCAGCAGCCGGCGCTGACGCGAACCGTGGCGCTGATGCGCGGGCCGCAGCCTCTGCCGCCGCTGATAGAAGCGTGTTTTACATTATTACTGAGTTCGCTGCGGGAAGTGAATCTGTAGAGGCCGTTGCTCTCTCAGCTTGTTGTGGTGAAATGCGAGAGAGGTAACGGAATAGTTTCTTGTGCCTTTTAAAATCAAATAGTTATGGCTCTTTAAAAACATCAATTTGTTGCAAAAATGTCGGTAGATTGTTCTTGGTGGATAAATTTATTATAAAACAATAAGATATGGTTAGT # Right flank : ACAGTCAATGTTTCCCGAACATGGTTCTAAAGAGTGTTCCCCCGCAGCTGGCCGCCGCAGGGGCTGATTTACGGCGTCACGATATTGAACCAGAACTCAAATTTATCCATATAGCCCAGCATCTCATCCAGCTTCGCGCCATCGCCGGTCACTTTCACTTCCCCCTTATCCTGCGCCTGTTTTAGCGTTTCCTCTTTCAGGATGATTTTGTTCAGCGTGGCGCGATCCAACGCAATGGTAGCATCCGCGTCCTTGGCTTCGGCATCGGCGGTGTGGTTGAGCACGCCGTTTTCCAGCTCCAGCTTATATTTACCGCCATCGTTACCCAGGTCGATATTGAACACCGCTTTGGCGGTTCCGGCTTTCTCACCATTAATATGCACCGCAAGGTAATCGAAGAACATTTCCGGGGTCATCGCCCGTACGGTATCCGGGCTGGCGGTGTTCGGCGTCGGGCCTTTCACTACGCCGTTGCGTAGCTCCTGAGCGCCGGTCAGGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //