Array 1 1223933-1220782 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHMR01000001.1 Natrinema altunense strain 4.1R Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1223932 30 100.0 37 .............................. TGGTCGTCTCGAGGTCGCTGCTCGCGTCGTAGGACCA 1223865 30 100.0 35 .............................. GGCCATTATGCAGACTGCCCGCATAGGGATATAGA 1223800 30 100.0 35 .............................. GGCGTGATGATCCGGATGTACGTCACTGCAAGCCC 1223735 30 100.0 38 .............................. TGGGTACATCGTGACCGCGTCGACGGTAACGGTCGTCC 1223667 30 100.0 35 .............................. CTCCCGATGGTCACCGAGACCGCCGGGCTCGGTCA 1223602 30 100.0 35 .............................. CCGCGTAGCTTCGCGTTCCAGAACCAGGGTGACGA 1223537 30 100.0 38 .............................. GACCGGCGGCTCCACGACTCGGGTGACGTCGACATCCG 1223469 30 100.0 38 .............................. CTCACTGATTCCTGGAAAGGGGTGTTCCGCGAGTGAGC 1223401 30 100.0 38 .............................. CTCGTCGCGACCGTCGTCGAGACGGATCCGCTCACACT 1223333 30 100.0 37 .............................. GGCCAGGACCCTATCGACTTCGACGGCGTGGAGGGCG 1223266 30 100.0 36 .............................. GGAGACAACCACTCACGGGAGGGGCTCGTCCAGAAA 1223200 30 100.0 36 .............................. GACCCGAGCCAGGAGGACGGCGGCAGCTGGGAAGAT 1223134 30 100.0 39 .............................. CGAATGGGAGACCGCCGAGGACCTGGTCGACGGTCTCGC 1223065 30 100.0 35 .............................. CTCTCTGGCAACTGTCAAAAACATCAATTTTGAGG 1223000 30 100.0 36 .............................. CGCGAATGGAGAGACAACAACCAGTGGACAGACCTT 1222934 30 100.0 37 .............................. TGAACACGGTAATCAAGAACCATGCTCTTGAAATCGT 1222867 30 100.0 37 .............................. GGACTGTGGAAGGTCGTCCGAACCACCGAACGCGGCG 1222800 30 100.0 37 .............................. TCCGTGCTGTCTTCGCTCGGTTCATCACCGCTCTTGA 1222733 30 100.0 37 .............................. ACTCTCCCGCCTCAGACGGCCGCTCACCGTCCGACAC 1222666 30 100.0 36 .............................. GCACAACTACAGCCCACCTCGCTGGCTATCTGATAT 1222600 30 100.0 37 .............................. TTGAGATAAACGGCCGCTTCGTTACTCCCGAGAGAAG 1222533 30 100.0 36 .............................. CAAACACGCCCTGGTCGTTCGTGTCGCCACCAATGT 1222467 30 100.0 38 .............................. AGTGTCTACTGGGCGACCGAGGAGGACTTCGAAGGCGA 1222399 30 100.0 37 .............................. GACGAGTCGAACGAGGTGTTCGTGCTCGAGACTGACG 1222332 30 100.0 35 .............................. GCGGCCAATGAGTTATCCGGCGACTCGAATTATCT 1222267 30 100.0 37 .............................. TCGGCCGAGTATCCCGGTTCCGATCGGTTCGCGGCCG 1222200 30 100.0 36 .............................. TCATCTTCAGGCCGGAAATCCCGCGCGTTCCGCCGG 1222134 30 100.0 35 .............................. GACGCGATGGACGCGGGAACCATTGACCCGAATGA 1222069 30 100.0 38 .............................. TCACTGCGATCACCTCTCAGGTCGACGACCTGACAGTC 1222001 30 100.0 33 .............................. CGCTTGGAAACCTGCTTATTCGGCTCTGGACGA 1221938 30 100.0 34 .............................. TTCGACAGTCTGCTCGAGGACGATATTGAGGACA 1221874 30 100.0 35 .............................. GCCGTGTTCCGGCGCGTGGACTTCGATGGCATGTC 1221809 30 100.0 38 .............................. TGCTGTCGACTCCTCCAATGTCAATCTGATCAGCGTTG 1221741 30 100.0 37 .............................. GACCGTCTCACCGCCTCGCTCGAGAACGTCGCCGAGG 1221674 30 100.0 36 .............................. GCGAGCGAGCACGGCGTCTCGCAGTCCGAGGCGGTG 1221608 30 100.0 38 .............................. TCCCCGTTCGCGAGCGCGGTCGCGTTCAGTGAGGCCGT 1221540 30 100.0 38 .............................. ATGGCAGTTTGGCGAATTGGTGACAGAGCGCGCCCCGT 1221472 30 100.0 35 .............................. ACCGGTCACGTGAACCAGACCTACGAGGGCCTTGT 1221407 30 100.0 34 .............................. GTGCCGTCAGACTCAGTGAGGGTGTATGATGGGT 1221343 30 100.0 37 .............................. CGACCACTCCCCGACCCGTCCCCGGTCATGATGCTGA 1221276 30 100.0 38 .............................. AACATCCGCTCGAATTTCCGCTCTCGCGTCGACGAGTT 1221208 30 100.0 37 .............................. GACACAGAGGATACCGCTGATTGGTCCTGGGAGGGAG 1221141 30 100.0 37 .............................. GGGACCTGGGACTCCAGTAACGAAAACTGGACAGTCG 1221074 30 100.0 37 .............................. TCGGATCTCGCGATCGCGTCGGAGGCCACGAGCAACG 1221007 30 100.0 38 .............................. ACCACGAATATCACGGGCTAACGCGCTGCCCGTTCTGT 1220939 30 100.0 33 .............................. GACTGCAACAGGCCCATATCGAACGCCTCGAGC 1220876 30 100.0 35 .............................. TCATCACCCGAGATACTGAGAAACGCCGCTATCCC 1220811 30 93.3 0 ............................AT | ========== ====== ====== ====== ============================== ======================================= ================== 48 30 99.9 36 GTTTCAGCAGGACCCTTGTAGGGTTGAAGC # Left flank : CGCTCGACGAAACGGTTGCCCATCCACGCTTGAATCGAAAAGTGAGCTACAAAACGCTCGTCCAGACTGATGTGTACTCACTCAAAAAGCATATTCTGACCGGCGAACCGTATCGGCCGACCGAACGGTGGTGGTAACGATGTTCGTTCTTATCACCTACGACGTGCCGGCGGACCGGACCAGAATCTATCGCAAACTCCTCCGAAAACACCTCGAGCACATCCAATACTCGGTGTTCCACGGCGATATTACGGCGGGACAACTCGTTACGATCACACAGGAGATCGAAACCCGACTCGAGGAGGACGATTCGATCTATATCTTCCAAGCCGACGTTTCCGCAGCCGTCGAGTGTACCGTGCTCGGTGACGCGGCGGAGCCGGGCCGGCGATTTACCTGATTTCGTCGACCCCCCGGGCCAATTCACACAATTGGGGGTCGACGACAGTCTCGGTTCAAAACCAAGGGCATTAAACCCTCTGTGGCCGTTGTTCCGGATG # Right flank : GGTGACGTTCGCGCGGAACTGCAGCACCGGCCCCATTTTAATTAGATTTTCGATCAATCCAAAACAAATTCACCCGGTTGGGCATGTCGGAACCCCTCATATGCGACGAGGCGACTCGAGCAACGACAAAAAACGAGTGCTCGGCGGCCCGTTATTCGCGCTCGAGGCTGCCGGGCGGGACGGAACAGCCACAGGGGGAGGCGGTGGCGTCGCTGGGACCGTTGACGGTCACGACCCAGACGGGACGGCCGCAGGCGGGACAGTCGGGAAGCGACCAGTCGGTCGCGTCAGCCGCCTCGTCGGCCGGCTCCGTCCTCGTACTGGCTGGGTCGACCCACTCGTCGTGACCAGTCATCGCGACCTCCGTGGCCGCCGCGGCCGGTCCCGAGTATCGGGCGCTGTCGCTGGTCGTTGAAGTTGATTCCATCGTCGTGCGGGACGTTTATATCCCGGTAGAATGTATGCGGTCATGCTTTCAAATCCCTCGGTGGGGATTGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGCAGGACCCTTGTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1237171-1233834 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHMR01000001.1 Natrinema altunense strain 4.1R Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1237170 30 100.0 33 .............................. CCGAAACTAGGTTCCGCTGAACGGTGTGACTGC 1237107 30 100.0 35 .............................. GCGGAAGCGGCGGGGGTCCAGGCCCCCGCAACCCG 1237042 30 100.0 36 .............................. TCGAATCGAGTGACGACGTAGTCGAACGGGCCGACT 1236976 30 100.0 36 .............................. GCGATCCGGTGTTCCGTTTGCGGAGAGGTCGATCGT 1236910 30 100.0 38 .............................. TCGTCGGCCGCTTCCGGGCCGGATTTCGACGTGCCGCC 1236842 30 100.0 37 .............................. GTCCGACCGATCACCGTCAGCGCCGCCTGTGACCATC 1236775 30 100.0 32 .............................. GCTTCGACGGGCTCGGTTGCGATGACGGTCGA 1236713 30 100.0 37 .............................. TCGTCGGGATCGATCTTCGAGCGCGCAACGGCGTCAG 1236646 30 100.0 36 .............................. CTGCCGGAGTCGAACCGTGTGGGGCCTCGAGACGTC 1236580 30 100.0 36 .............................. AGCCTTCGACGACCAACTCATCGACATCCTCGAGAT 1236514 30 100.0 36 .............................. ACGATCGGCGCGCTAGCGGGTCTCGGATACGCTGAC 1236448 30 100.0 36 .............................. GCGTGCGTTTCGCGGGGGGCGCGTCCGATCTGGGCG 1236382 30 100.0 36 .............................. CGCCTCACCTCATACACGTCCTCAGAGGACTCATCC 1236316 30 100.0 34 .............................. GACCTCGTCATTATGGACCTGCCGGGCAACGAAA 1236252 30 100.0 36 .............................. GATCACGAGTTCGACAGTCGCGGTTCACTCGAGGTT 1236186 30 100.0 38 .............................. TGATCGAGGTGACGAGTGATATGTCCGGAAATGCTATG 1236118 30 100.0 36 .............................. ATTTTGATTGGTCGTCAACCCCGTTTAGTTTGGGGT 1236052 30 100.0 34 .............................. TCCTCGGGCATTCTACTGTCCTCCGTTGGCCTGG 1235988 30 100.0 37 .............................. GACACGAGCAGTTTCGGATGGCGACCGTCTCCCTCGC 1235921 30 100.0 33 .............................. GTACGTCGCTCTCCGGGTTCTCGAAGATCCCGA 1235858 30 100.0 35 .............................. GCTTTGTACGAGACGATCACTGCGCCGGTCGACTG 1235793 30 100.0 36 .............................. CGGATCGAGGCGGCCGGCGGTCGCGGCCTCGAGGAG 1235727 30 100.0 37 .............................. AACGAGTAACCGCGATGAGCAACCCGCCGGCACTCCC 1235660 30 100.0 37 .............................. TACCGGAGCCTGAACAGCTACTTCACCTGGTTCCTCC 1235593 30 100.0 35 .............................. AATCTGCGGATGAGGCCGGACAGTCTGCCTCTCAG 1235528 30 100.0 37 .............................. GCCTCGAGGCATTCGACCTGGTCGCGGATCGACCGCT 1235461 30 100.0 36 .............................. GACCTCGGCTACCACGACGGCACGCTCTACGCTGGA 1235395 30 100.0 38 .............................. TCTCGGAAGTGCGGCCAAACGCGGGCCGCACGTTCCTG 1235327 30 100.0 35 .............................. GAGGTCGACTCCTATTTCCCCGGCCCCAACGTCGC 1235262 30 100.0 35 .............................. TCTCCGACCGCGGCGGGCTCGAGGACCTTGAGAGT 1235197 30 100.0 36 .............................. GGAGGTCGTGACTACGGCAACAGATGACGGTGTTTG 1235131 30 100.0 38 .............................. GGCGTTAGCGTCAAAGCAGAACCCGTTACACTGCCGTC 1235063 30 100.0 37 .............................. CAGGAGTTGAACGCCCGCGCCCACGCCGACGACGACG 1234996 30 100.0 38 .............................. ACCTTTTGAGACGACAGGTTGAACTCAGGGACGTTACT 1234928 30 100.0 35 .............................. GGCCCAGAGCCGTTGATTAGTCGTTTGACGATCGC 1234863 30 100.0 36 .............................. ACTGTATCATCGGTGATGTTTGTCTGGTACTGAACT 1234797 30 100.0 36 .............................. GAGCGTCGGTGGCGGATCGATCGCCTGGAGCAACAG 1234731 30 100.0 36 .............................. GCCGTTGCTGCCTGGAGAGCCGTCGGTCACCGACGT 1234665 30 100.0 40 .............................. TCAATAACCTAATCGACATCGAGAAGATCCGGGGAGCGGC 1234595 30 100.0 34 .............................. ATGACCGGCGAGACGAGCGAGGCGATCCACCTCT 1234531 30 100.0 37 .............................. ATCCCTTGCCAGATCCGGCTCGCCTCGTCCCAGGCGT 1234464 30 100.0 35 .............................. TATTTCTCTGCTCCGAGTTCCTGAGCCGTCCGCTC 1234399 30 100.0 37 .............................. GATCACACCGAGACAGTCTGGTAGCGTTGCATCCAGA 1234332 30 100.0 37 .............................. TTGTACTGTCCCGGGCTAGGCCCCCGGGAACCTCACG 1234265 30 100.0 38 .............................. ACCCACGCGAGAAGTTCGAACCGACCGAGGACGAGCGT 1234197 30 100.0 38 .............................. ACCCACGCGAGAAGTTCGAACCGACCGAGGACGAGCGT 1234129 30 100.0 36 .............................. AAGCGTCTCTATCCGCGTCTGCGTGAGCGTGACAAG 1234063 30 100.0 35 .............................. GTACGAAATAATTTTTTCTTGCTCGTGAAGCCTCC 1233998 30 100.0 36 .............................. ATCGGCGAGATAACCGATTTCCGGCCGTGGGCCGGT 1233932 30 100.0 38 .............................. CAGTTGCCACGGGATCGCAGACCCGTCCTCGTCGGGGT 1233864 30 93.3 0 ............................CG | A [1233837] ========== ====== ====== ====== ============================== ======================================== ================== 51 30 99.9 36 GTTTCAGCAGGACCCTTGTAGGGTTGAAGC # Left flank : GCCCCGAACCCGGCCCCGACCGCGGCGGCCTCGTCGGCTTCAATCTCGAGGGCGTCCACGCCCACGACCTCGCCTCGATCATGAACGATCACGCGGTCGCGATCCGCGCTGGCGACCACTGTACCCAGCCGCTCCACGACAAACTGGGCGTCGCGGCCTCGGCTCGCGCCTCGTTCTACGTCTACAACACGACGGCGGAGATCGACGAGTTGGCCGCCGCTATCGACAATGCGCGGCAGCTGTTCGCGTAAGCGAACGCTGACCGCGAGGCACGATGCTTTCACTGGCGCTCGAGGGCCGTCTCGGTAAGCACCGCGAGCCAGGGCTCACAGTGGAGTCATCGCTTCGGAGGAACGCGGCAACTGTTCGCGCCCCACCGTTCGTCTCAGGTTTGTGGAACGTTCGTCGACCCCCCGGGGAGTATTCCAGTAGTAACGGTCGACGAAACGAGTGCCGTTAATCCAAGCGTATTAGGTTCTGTAGGTTCGATATCCAGCATG # Right flank : GCTTCAGTGGGTGTTTAGTAGATCCATCTGCTTAAGAAATCACCAATCGCAATGGGTATATGTCTCATGTCACCAATTACCTCTTGTCTTGATCTGAATTAGCCATTAAATATATTACAAAAGAGCATAACACACGGAACGTGCCTTTCGATATTAGTAGTGAGGATGACGATACACAATGAGGCTGCTAGCGCGACTCCGCGCACGCGCTGACACGTCCTATGATAACGCGTACCACCACAAGCTTCGCGGGCGGATGTGGGGAGCACTCGAGAACACCGAGTTCGATGATCGCCACGACGAAGGGCAGCCGGCGGGGCTTTGCTTTTCGAATCCGTTTCCACCACGAGACATGCGGGAGGGAGATCGCCGTACTCTCCTCGTTGCCGCACCGGAACGTGATCTGATTGGGGCCGTCGCGACCGACCTCGACGAGAATCGAGAGTTGAATATCGGCGAGATGCCCTTCGAAGTGACCGATGTGTCGCTGCTGGCCCCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGCAGGACCCTTGTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //