Array 1 868190-867458 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASWF01000001.1 Enterococcus raffinosus ATCC 49464 acOtA-supercont2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================= ================== 868189 24 100.0 41 ........................ CACAGGATTGGTCTTGATGCTTGTTTTGAAACAAAAATCTG 868124 24 100.0 40 ........................ AATTCTCCATCGATTCGAATATAGCGGGGTTCTCTATCTA 868060 24 100.0 41 ........................ GTTGATGTTCCAAATGAGGCATATCATGGAAGCGATATCTA 867995 24 100.0 41 ........................ GCTGCTAGGTCCAACCCTACTTACTCAGCTGTAATTATCTA 867930 24 100.0 41 ........................ GTATCATCGTCATACTGAAATTCCGTAAACCACATAATCTA 867865 24 100.0 41 ........................ ACAAAGAGCGGTCTTGATTATTTCCCTCTTGATGTTATCTA 867800 24 100.0 40 ........................ ATTTCAAAAACTATAAAAGTGAATGATAGAAACTAATCAA 867736 24 100.0 41 ........................ ACAGCAGTAGAAGAGAAACTCATTGATATCAAGTTCATCAA 867671 24 100.0 40 ........................ CAAGTAATTGTTCCAAGGATCGGAATTTTAACAAGATCTG 867607 24 100.0 38 ........................ GTCATTGCCGTAGAGAAAGTATTTCCTGGGGCTTATCT 867545 24 95.8 41 ...T.................... TTCCCTGACGCTTCAACACCTACGCCTAGCCCAGGCATCTA 867480 23 75.0 0 .........C.A..-....G..CG | ========== ====== ====== ====== ======================== ========================================= ================== 12 24 97.6 41 AATCTAAAATAGTGGAATGTAAAT # Left flank : CAAATCTTGCTGCTTTTCACTTAACAAACTATATTCTTCTCGAAGTTGAGCAAGTAGATATAGATGATTTAGAAGGAGAGTTGTATGAAGTGTCTGCAGAATGTCGCTACGTTTGGGAAGCGATCCTTGAGAAAGCGACCATACAAGAAAAAGAGACAATGTTTACTTGGTTTAAAAATCAGCTTAAACATTCTAACTATGGGTTAAGTTATAGTGAAATTGAACAAATTTGTGAGGAATATTTTTAAGGGATAGAGTTTATGAGAGGGTAGGAGTGGATTCTGCTGATAAATCAAATATTCATCAAGAATTTCTAGTAAAAAGCTTAGTACAAGTGAACCAATCACAATTAAATTGACGCTATTTTTTTTGGGGGATCTGTCGACCTCAAAAAATCAGAAATTTCTGTAGTTGCGACTGCAGCATGAAAATGTTGAATTCTAAGGATTTTCTGTTAAGAATACTGTTATTTTTGTTGAGTGATGATGTAATAAAATCTG # Right flank : CAAATTATGTTATCACACAACCAATTCACCCAGAAAATTTCTCCAATTCCAAAGCACTAACCCCATAAAAAATCTACAGCCACCATCGCAAAAACACTTTTACCAGCTGGAGAGTGTTTTTTTGTCTCTTTATTTATTCCTAAACTCTGAAACTTTCATCCGAAACGTGGGTGATCTTTGCTAAAATTAAGAATAAAACCATTATTTTTATAAGGAGAAGACCGATGCAGGAGAAAATAAAGGTATTGATCATTGATGATGATCAAGAGCTGTGCTCGATTATTGAACGGTATTTGACGCGTGCTGAGTATGAGGCGGCGTTTGCTCATACGGGTGCGGGCGGATTGAAAATGGCCTTAACAGGGGAGTATCACTTGATCGTATTGGATATTATGCTGCCGCAAATTGACGGGTTGAGCATTCTAACAGAGATTCGCAAGGAGAGTGTGGTGCCGGTCTTGATGTTGACAGCAAAGAACGAGGAGGCGGATAAGATTCGC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCTAAAATAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 870892-869875 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASWF01000001.1 Enterococcus raffinosus ATCC 49464 acOtA-supercont2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 870891 30 100.0 36 .............................. GCTATTAATGCCATGCAAGTACCAAACACACCGTTT 870825 30 100.0 34 .............................. TTTGATAGTTTAGGTTATTTATTAGAAACAAATA 870761 30 100.0 37 .............................. TAATAAAAATACTTATCCTTTAACAATTGGGATTGAT 870694 30 100.0 34 .............................. CTGGTAAAAAGAAAGAACGAGCTATCACGATGGA 870630 30 100.0 36 .............................. CCCTATGGAATAGGCTCACTAGAAGAAAAGTAACAC 870564 30 100.0 36 .............................. TCAGTATATTTAAAGGATCGTGATCCCTTTGACCTC 870498 30 100.0 36 .............................. ATTGCTCGCCCAGATGTTAAAAAGGCATTTGGACTT 870432 30 100.0 36 .............................. TTGGCACACGACAGGCGATAGACCTGATGGAGCAAA 870366 30 100.0 37 .............................. GTTAGTTCTCTAACCATTTGATCAATGGTCCACATTT 870299 30 100.0 37 .............................. GCGATTACAGAAGTTGTCGATACTGACAATGAAGAAA 870232 30 100.0 36 .............................. CCTTGCAAGTAACAACTGAAAAACTAAAAGGAGCTG 870166 30 100.0 37 .............................. CCCACATGGTCGCTAAAAATACAAACAATATCCCCCG 870099 30 96.7 36 .......C...................... GAGCGCCGAAGACGAGTACCAACTTGATCCGCCATT 870033 30 100.0 34 .............................. GGCGTTGAGTACGAAATGGACATGACTGTAATGG 869969 30 100.0 36 .............................. TTCATATCCCGAAGGTCATGCTCTGCTTCTCTCATT 869903 29 90.0 0 ......................-.A...T. | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.2 36 GTTCAAATCTAAAAATAGTGGAATGTAAAT # Left flank : TATGAACCTTTCAAAATTTGGTGGTGAAAATAATGTATGTCATTTTAGTTTATGATATTTCTTTAGAAGAAAAAGGCGCTCGTGTTTTGAACCGAGTATTTAAAATTTGTAAAAAATACCTAAGTCATGTGCAAAAATCCGTGTTTGAAGGGGAGATCACTCCTGCAAAGCTGAAAAAATTAGAACAAGAACTAAAAGAGTACGTTCGCGAAGACTTGGATTCAGTTTTAATCTTCAAAAATTCAAATAAGAAGTGGTTAAAAAAGGAATACATCGGAATTGACGGATCAGAACTAGTTTCGAATTTCTTTTAAGTTTTAAATCTGTCGATAGAGAATACCTTAAAAAACCGGTAGTTACGACAGACGATAGAGAATGTTGTGAATATAAGGTTCTTTTTGTTATCCAGTGTTATTTAATTTTAAAAAGGAAGTCATTTCTATGAGGTCGACAGAAATGAGTGAAAGAAGCCCTCTATTTCAATGTATAATAGTTGTGGG # Right flank : TTGGGTAACTAGAAAAATTCCAACTGCGAGTTAGATATCTAAAATAAGAAATTAATTTAAGAGGTAATTGAATATAAAAAAGCATAGTACATTATTGAATTTAAGAGGGTGAGAAGAGATGAAAATCTATACGATTCAACGGAGAGATTTTCTGACATATACTGATTCACAAGGATTTATAATTCCTAAAAGAGATCCAGAATACTCTATCTTTACGGATGACGAAGAAGGGGAAAATTGTCTGTGAGCATTAGAATGGATGAAAAGGCAATTTATAAAACGGATGGACATACCTTTAGATCGTGATTTAATCTGGGTTTGGCCGGATATCTATGCGTATCTTTCAGAAAAAAATGACATTGATTTTTCGAGACATGCTCTTTTCACCTTTGAAGTCCCTGCAGCTTACTACAAAAAAATGATTTTATGGTCCAATTTTATTAGTTGGCATGAGGTCTTGAACCGGTTATGGGAAGGAGTCGCAGATGAGGACGAACGAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATCTAAAAATAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //