Array 1 3019-430 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNNH01000856.1 Xanthomonas oryzae pv. oryzae strain OS109 scaffold855, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3018 31 100.0 35 ............................... CACCGTGCGCGCCCAGATTTAAGGCGATTGAAGTG 2952 31 100.0 34 ............................... CCTGGTCCGGGCGAGCAGCCCAGATGATGCTGTC 2887 31 100.0 35 ............................... ATAACTCTCTCTCCATATCAGTAGACCCCTACACG 2821 31 100.0 35 ............................... TCGCGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 2755 31 100.0 34 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGC 2690 31 100.0 35 ............................... TTCCCAATCTCGCCAGGCTTGGCGGTCTCATACCC 2624 31 100.0 34 ............................... TTCGCCGGCTTGGGCCTGGAACTTGACGAAAAGG 2559 31 100.0 34 ............................... CAGAGCCTGGAACATTACTTGCAGTACCTGGCGG 2494 31 100.0 34 ............................... GCGGCGAATATGCTTGAGTGGCCGGTCAAGGACG 2429 31 100.0 35 ............................... GGTCAGGTATTGGGCTAGCGGCTGTGTCAACACCA 2363 31 100.0 35 ............................... TGCATTGCTGTTTGGTGGCAGCATCAAATACAAGT 2297 31 100.0 35 ............................... AGAAGTGCCTGCTAGAGTTTGCAAAAGGAATGCAA 2231 31 100.0 33 ............................... TTGAGAGTAATTCGGTGCACACGCATGTCACGG 2167 31 100.0 35 ............................... CAATACAATGAAGCACATGACCACACATTGACTTT 2101 31 100.0 35 ............................... TATGTCGGTGGCAAGAAGTCCGAAAAGCAGCTGCG 2035 31 100.0 37 ............................... CGAACATTGTCAACCCTCGCCACATTAATGCCAGGAG 1967 31 100.0 35 ............................... CCGCGCGGCAAGCCGCGTATTCCAGCCGCCTATGA 1901 31 100.0 34 ............................... CGGTGTATAAGGGACGGTATCGTTGTTGACAAAC 1836 31 100.0 36 ............................... TGCCATTAAGGCAGAGGCACAGGACCAGAAGAAGGC 1769 31 100.0 35 ............................... TTCCGTGTATTCGGATTCTTTGATTGATCCGATCC 1703 31 100.0 35 ............................... CGATGGTAGTGGTTTTAGTTGTGACGATGGATGCT 1637 31 100.0 37 ............................... CAGAAGCTCACCGCTATCGGCATGAAGGGCCGCTATC 1569 31 100.0 37 ............................... ACTATAGTCTTTGATGTGCCTTCTGTCGCTGGGAAGA 1501 31 100.0 33 ............................... TATGGCTGATATTTATGTTGCCCGTACTGGCCT 1437 31 100.0 34 ............................... GATGATGAAGACCTGTTCGCGGTGCGCGCGCAGC 1372 31 100.0 34 ............................... ATGAAGGTTCCGTCTGGCGGTTCGTGTCCGGTGT 1307 31 100.0 34 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGG 1242 31 100.0 34 ............................... TGTCTGGCCCCTGTCTGCTTATCTAGCTCCGCAA 1177 31 100.0 35 ............................... TCGCGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 1111 31 100.0 34 ............................... TGCGTGGTACTGGTGCCAATGATGGTCTGCTGGG 1046 31 100.0 35 ............................... AATGACTCCGCCAGCGTGGCAGAAAATGCCCCGAT 980 31 100.0 33 ............................... TGTATTGCCCTGGCGTAGACCCCTGCCACTCTG 916 31 100.0 34 ............................... GATGTACCTGCTAGCCTCTAACATACATGCGTGC 851 31 100.0 33 ............................... CATACTTACGCCCCCGAAAATCGCAAAAATAAA 787 31 100.0 33 ............................... CCTGCCCAAGTCTGCTGCCTGCAATGCCTCGTG 723 31 100.0 35 ............................... TTACCGATGTTGACAGCCAAGCGGGTGGGGCACTA 657 31 100.0 34 ............................... GCACACCGCAGGAAGCACAGACTGGACAGCTGGC 592 31 100.0 36 ............................... GACACTTAACAGGGTGAGAGATCTCCCAGACACTAG 525 31 100.0 34 ............................... CCGGTCCCGGCACCAGAGGACATCACCCTGTCAA 460 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 40 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CTGGTTGGAGGGCGCACTAGGGAAGGTCTGAACAACCCATCAAACCTCTAAAATTCCAGCTTCTTGCATTTCAATGACTGGAAAAATGCTGAGTCGGGTGCGATTTTTGCAACGTTCTGGCGGTTTTGGCTGCCGCCAGGCAGCATTATCCCCTGGCCGGCAGCAAGTGCCGGCGCACCATCCACAGATTCGACAGCGCAAATAACGTCTGCACCTGTGCGGTGTTCTTGGCCAGGCCGCGATAGCGCACCTTGGTGTAGCCGAACTGCCGCTTGATCACCCGGAATGGGTGCTCCACCTTCGCGCGCACGCTTGCCTTGAAGTGTTCCCAACGTTCTGCCCAAGCACGCGCGCGCTTGTTGCCAATGGCTTGAATCGTGGAGCGCTTGGCGGCAATGAAAAATGCAGCCTCGCAGCTCTGCAACTCGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 575-2638 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNNH01001216.1 Xanthomonas oryzae pv. oryzae strain OS109 scaffold1215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 575 31 100.0 34 ............................... TCATCGGCGGCCACGATCTTAAGAACGGCGCCAC 640 31 100.0 36 ............................... CGCCAGGGGTATCGCCTTACGCTCCGCACTATCAGT 707 31 100.0 34 ............................... TCGGCCACACTGGCCGAGTCATTGAAGGTCATGT 772 31 100.0 34 ............................... CGAAGTTCATCCTGCGCTTCTTTGATCTTCTCAT 837 31 100.0 36 ............................... CACGACACCCAGCACAGAATTGCAGCCCCTGTGTAA 904 31 100.0 35 ............................... TCCATTGCCAGCACATCCACCACATTGTACTTCCG 970 31 100.0 35 ............................... ATCTCGTGTCATCAGACCATTGTTGACGAGCTGGC 1036 31 100.0 35 ............................... CCACCAAAGTTACCACGGGCATACCACTGTTTGAC 1102 31 100.0 34 ............................... CTGCGCAAAGTGGCATGGTGTAGACACTGTGCTG 1167 31 100.0 34 ............................... CTGAGCGTCGAACACTATTTGAAGCACCTCGCCA 1232 31 100.0 33 ............................... GTCCAGCAGTATGCAGCACAGGCACGGATTGCC 1296 31 100.0 34 ............................... TAGCAGCTGGCGATGCGGGCCCGGGGGGCCTATG 1361 31 100.0 34 ............................... TGGTGCTGCTGCCGCTGGAGGCCCAGGCGTAGCA 1426 31 100.0 34 ............................... TGGTGCTGCTGCCGCTGGAGGCCCAGGCGTAGCA 1491 31 100.0 35 ............................... GTAACGGTCAGTTGCAGAGTGTCTACTACCAGATT 1557 31 100.0 35 ............................... TGAGGTGCTGGAGTCCATTGCACTGGTAGGCTTTG 1623 31 100.0 36 ............................... CGCACTATCCTTAACAACTGCCGGGTGTTGGTTGGA 1690 31 100.0 35 ............................... GGCATCGGGGCAGCTGGTGGATTTGTTGCTGCGGG 1756 31 100.0 34 ............................... TGGCTTCAGATGATTATGGGCGACCAGGCTGACA 1821 31 100.0 34 ............................... ATGATCACCGGTGCAAATCGTTTTGGGTACGACA 1886 31 100.0 35 ............................... CTGTCAACCAGAGCAACAACACAAACCGCTATGAT 1952 31 100.0 34 ............................... TGGCCGCCTTGGATCTGGACCAAAAAATCCTGTA 2017 31 96.8 33 ...A........................... TGGGCTAGACACCGTTGCAGAGCATGGATCGGA 2081 31 100.0 33 ............................... GTGCCAACATAGACACTGGTATCGCCAGCTGTC 2145 31 96.8 36 .....A......................... CCAACCTTGCTAAGCTTTGCAACCTCAGCCAAGGCG 2212 31 100.0 35 ............................... ACCAACTGACTGTAGTAGCTGCTGCGAGCGGCACT 2278 31 100.0 35 ............................... CCTCAATAGCGACCCGCCTTGCATCATGCCACGCC 2344 31 100.0 36 ............................... ACCGGATCATCAGCGATCTTGCTAAAGTTACTGATC 2411 31 100.0 35 ............................... TTGAAAATTGCTGAGTATCCGGAAGAGGTGCATGC 2477 31 100.0 34 ............................... AGTTGCCTACATGACCTTCAATGACTCTGCCAGC 2542 31 100.0 35 ............................... GACAACCACGCACCCGGGCGTGCCTGCACCGCCCG 2608 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 32 31 99.8 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GATCGTGCCCGACCGCAGGCTCTGCCCCTTGCGCGACAAATGGGCGTTGACCGCTTCCAGCATCCGAGCGGCAATGCCGTGGGTTTCCAGCAAACGGCGAAAGTTGAGAATCGTGGTCTCGTCTGGAACGTTATCCAAGCCGCCGAGCTGGGCAAAACGCCGCAGGGTCGGGATCTCGTGCAATGCCTCTTCCATCGCCGGATCGCTCAACGCATACCACTGCTGCAACAGATGAATCCGCAACATCGTCGCCAGCGCGTACGGCTGCCGACCCGGTCGTCCTGACACCGGATAGTGCGGCTCGATCAGGGCAAGCAGTCGCTTCCACGGCACGATGCGCTCCATCTCCGCAAGGAAGATCTCGCGCCGGGTCTGCTTGCGCTTGCCCAGGCCCTCGGCGTCACCGAACGTCAGTTGCATGGATGCCTCCTCATTCCGAACAAATAGTGTCTCGCATTTGTGGTGCGTTGTTCAGAGGTTCCCTAGGGCTACTGGCAGGC # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCCTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCTGTCGGAATGGATCGGGCAACGCCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //