Array 1 279194-277970 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQAD01000001.1 Streptococcus agalactiae strain RBH08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 279193 36 100.0 30 .................................... AATACTTTTGATTCAAGTGATGAATATCAT 279127 36 100.0 30 .................................... ATATAACTGCATACTACGCAGAAAAAGAAA 279061 36 100.0 30 .................................... CATACAAGGGTTACCCTCAACAGTAACTAT 278995 36 100.0 30 .................................... TAAAATACTGTAAAATCGTAATCGACATAA 278929 36 100.0 30 .................................... TTGGTGCTAATACTTCTACTGTTCCGTTCA 278863 36 100.0 30 .................................... TTAATGGAAGTTAACACATATCAAATTGTT 278797 36 100.0 30 .................................... CATACAAGGGTTAGCCTCAACAGTAACTAT 278731 36 100.0 30 .................................... GAAACTTCGATTAGTTTGCGTACTCGCTCA 278665 36 100.0 30 .................................... ATTAGTCCTGTTGTTATGATGGATGATTAT 278599 36 100.0 30 .................................... ACAAACCTCTAATGGATAATATAGAACAAA 278533 36 100.0 30 .................................... ACACAATTAAACATAAAGAAGTGCTTATTT 278467 36 100.0 30 .................................... GAATGAAGCAGGTATCAAGGATTATACTTA 278401 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 278335 36 100.0 30 .................................... AACCTTGATAGGCGTACTGTATGGATTCCA 278269 36 100.0 30 .................................... CTACTGTATTATCTGAAATAGTATCGTTTT 278203 36 100.0 30 .................................... TCTCGGGAAATGCAACTGATGCTGCAATCA 278137 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 278071 36 100.0 30 .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 278005 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : GATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //