Array 1 216044-216330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRH010000003.1 Listeria seeligeri strain FSL L7-1548 NODE_3_length_287181_cov_48.658455, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 216044 29 100.0 37 ............................. GTATTTGCGTTGTTTGAGCTATTCGACACCGATGTCC 216110 29 100.0 35 ............................. GATGTTTATTCGTCTTCTTTTCATTCTCGTTATAT 216174 29 100.0 34 ............................. TTCAGAAACGTCTTTTTTTCTCATGCTCGACCTC 216237 29 100.0 36 ............................. TTTTTCCGAGCCATCATCACAAGCGCGGTTTTGAGT 216302 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 99.3 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCAACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTACTTCAAGTGACCAGAAGTGTTTTAACTACTATTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGATTTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 222552-225436 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRH010000003.1 Listeria seeligeri strain FSL L7-1548 NODE_3_length_287181_cov_48.658455, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 222552 29 100.0 35 ............................. CCAGTTTCGGGTAGTTATGCACAAGACGGTTGTTA 222616 29 100.0 35 ............................. ACAGCCTTTATCACAAGTTGGATGGAGCTAGCCAC 222680 29 100.0 35 ............................. ACACTTACACACCACACCAAAGTTAAATGCCGTAG 222744 29 100.0 36 ............................. CTCAATAAGCTCTCTTTCTGTGAAGGTCACTTGGTG 222809 29 100.0 36 ............................. TGTAATTACACCTCCCCAGGATTGTAGATACCTACG 222874 29 100.0 34 ............................. TTGCTTTCAGAGGTGAGAAAAAACATGCAATCAA 222937 29 100.0 37 ............................. GTGGTCAACTTAAATGATGGGACACCAGTTAAATTTC 223003 29 100.0 36 ............................. ATATGTATCTTGCGAAAAAACACGTAGATGCATTAC 223068 29 100.0 36 ............................. CGGATTAATCAATTTGGCAATCGGTGAAAACAAAAT 223133 29 100.0 35 ............................. TGCTTTTCGCGATAGTTTTCTACCGCTTCAACTAA 223197 29 100.0 36 ............................. CTGGAAGAGGCGTGGCTAAAGATAGCTGAAATGAAG 223262 29 100.0 37 ............................. AGCCCAAATTGGTTATGGAAACGAGGAAGCTAAGTTC 223328 29 100.0 36 ............................. TAATGTGTCAAGAGCTGCTAGAGAGTCCGGATATTC 223393 29 100.0 34 ............................. GCTTTTCAAAAGAAAATCCCGCTTATTGAAACAG 223456 29 100.0 37 ............................. CAGAGTACTTACTTATTCGCACATGAATTTAGCAATG 223522 29 100.0 38 ............................. TAAGCGAGTGTCCAGCGTGTTCGCTATGTCACTTAACT 223589 29 100.0 36 ............................. CATTGTAAAGCGAAATTAACTTTGTTCGATGGTGAC 223654 29 100.0 35 ............................. CGAAATACTCTTTATTTAGTCTCATTGTCCTAACT 223718 29 100.0 37 ............................. TAAAAATACCTGCCTTAAATTTATTTTATGTACTTCC 223784 29 100.0 38 ............................. GCGATTGAAATTGTGAAAAATCGTAAATTAACGGTACG 223851 29 100.0 34 ............................. AAACCTCGAAACGAGAAAAATCGGCAACTTTGGC 223914 29 100.0 34 ............................. CTTGTTTTTCTTGGGGCATCTTTCTACTCCTTTC 223977 29 100.0 35 ............................. TCAGTAGATTCACTAATTCTTCTTGTGTGTAATCA 224041 29 100.0 36 ............................. ATAGCTCAGTATAGATATGGATATATCTACGGAATA 224106 29 100.0 36 ............................. AAACATTAAAAGGAGTGGTTAAAATGAAAAAAGCAG 224171 29 100.0 37 ............................. TTACCTCAAAGTGGCAGATGGTTTTATGGGGTATATC 224237 29 100.0 36 ............................. ACGAATTATTGGACGGCTGGCTGACCGTGATATGAC 224302 29 100.0 37 ............................. ATATGTATTCAACTATTATTCAGCAAAAGACTTGACA 224368 29 100.0 35 ............................. GAAAGTTATATCAGTGAATCAGTAGTAGAATATGA 224432 29 100.0 37 ............................. TTAATTCGTCAGTTAATTCGCCAGTTAATTCAATAAC 224498 29 100.0 35 ............................. CAAGGTCACCAAAGTTCCATTTCGATAGGTCGGTA 224562 29 100.0 42 ............................. TGGTTACTGTCAGTAATTGAACCTGTTTAGTATCGACGACGT 224633 29 100.0 33 ............................. AAGCTTAAATCTGAAACATTCCAAGAACCATCA 224695 29 100.0 36 ............................. ACACTATCTACGTGGTGTATTTCACCTCTGCGACCT 224760 29 100.0 37 ............................. AGACCAGACCAGTTCATCACAAACAGTCCGGTCGTCC 224826 29 100.0 35 ............................. TTCAATCACCTTCTTTCTTGTGTATCGACTTTATT 224890 29 100.0 36 ............................. CTAAATACGCCAGAAATGACCTGCCAGATGCCTTTT 224955 29 100.0 35 ............................. CTATGATATCTTCAAGGGCATATCTACATGTATCA 225019 29 100.0 35 ............................. ATTAGTTGTACTTCATTCATTTTCATGATAATTCC 225083 29 100.0 36 ............................. ACTAATCAGCCCTATAATGATATCCCGACGACTATC 225148 29 100.0 36 ............................. TGACATCACCCGTTAAACCCACCACAACATGTCCCC 225213 29 100.0 38 ............................. AACTTTTTCTGCTGCCTCATTTGTCATTTTGCACCTTC 225280 29 100.0 35 ............................. ACGACTAAATACGAATCAGCTAGGCATCAAATGAA 225344 29 100.0 34 ............................. AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 225407 29 86.2 0 ........C....C..A...........G | T [225433] ========== ====== ====== ====== ============================= ========================================== ================== 45 29 99.7 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGATTTTGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACAAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACAGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACTGGAATTGAGAAATCTAGTCCCGAAAGATATGAAGATTTATTCGGGGGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 234035-235558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRH010000003.1 Listeria seeligeri strain FSL L7-1548 NODE_3_length_287181_cov_48.658455, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 234035 29 100.0 35 ............................. AGTTTTACGAGATGTTCGTTATTTCTGTCATCAAC 234099 29 100.0 36 ............................. CCATTTCCTTGATAATTACCAACGCCATTTCAATTT 234164 29 100.0 37 ............................. TAGCCAATTTGGGCTAGGAATTCAGCCGGGGAAAGTC 234230 29 100.0 34 ............................. TCAATCACCTTATATAATCGCAATGCTTCTGCTT 234293 29 100.0 37 ............................. ACTTTCTTATCATTATTTGTTTTTAGTACTGGTTTTC 234359 29 100.0 35 ............................. AGATACTAAGGTGCGTGGGTGGCTATGGGAATCAT 234423 29 100.0 36 ............................. TCCTTATCTATTTATATTTTGTGTTCCTTTACTATA 234488 29 100.0 36 ............................. AAAAGAGGAATAGACTCTAAAGTTTACATTTTTAGG 234553 29 100.0 36 ............................. GGTAATGGATTCTATTGAAACATCGTATTTAGAACC 234618 29 100.0 38 ............................. CAATCTAACATGGTGTGCCTTCGCAAAGTTGCCAACAC 234685 29 100.0 35 ............................. GACGAAACCGACAGCCTGCTAGAGAACATAGCAGA 234749 29 100.0 36 ............................. GAAATAGTCTTCGTGTTCTTCCGCAACGTCCTTGAC 234814 29 100.0 37 ............................. ATCGTCACGGTTTGAAGTGCTTTAGTCAACGAAGAAT 234880 29 100.0 34 ............................. TTGTGCGAAAAACACAAACAAGATTTAATTTTAC 234943 29 100.0 37 ............................. TTTGTAGGGATTGCTATCCTTCCATTATTCCCGTTAT 235009 29 100.0 37 ............................. AATTGAGGGCCTAGTGGGGTAAAACCCGTGGAGGTTC 235075 29 100.0 37 ............................. CATTACAAATTTCGCACATTATTCCGCCACCTCTTCA 235141 29 96.6 35 .......C..................... GACGCAGGATTTGGTAAAGGCGTAGGTACACGCTC 235205 29 96.6 38 .......C..................... ACTGAATTGGACTTCGAACTCTTGGCCTGTCAAATAAC 235272 29 96.6 35 .......C..................... TATTTATTCAACCTCCATAAGTCCGCGCGCGGTAT 235336 29 96.6 35 .......C..................... ACAGCTTTGTGTGTTCTTTCTTGGTGTCCAGTAGT 235400 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 235465 29 82.8 36 ..A....C....C........TC...... GTGGTCAAAGCCTTCTTATTGCCAGCAGGTGAGCCC 235530 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 24 29 97.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACCCCCCAACCCTCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //