Array 1 29370-27405 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUP01000053.1 Salmonella enterica isolate STY145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 29369 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 29308 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 29247 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 29186 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 29125 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 29064 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 29003 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 28941 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 28880 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 28819 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 28758 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 28697 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 28636 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 28575 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 28514 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 28453 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 28392 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 28331 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 28270 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 28209 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 28148 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 28086 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 27983 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 27922 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 27861 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 27800 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 27739 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 27678 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 27617 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 27556 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 27495 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27434 29 96.6 0 A............................ | A [27407] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5325-6756 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUP01000086.1 Salmonella enterica isolate STY145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5325 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5386 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5447 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5508 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5569 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5630 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5691 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5752 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5813 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5874 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 5935 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 5996 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6057 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6118 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6179 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6241 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6302 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6363 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6424 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6485 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6546 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6607 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6668 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6729 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //