Array 1 11928-11447 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVJZ01000118.1 Bacillus toyonensis strain AFS059543 AFS059543_73_C1_Contig118_140411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================ ================== 11927 23 100.0 42 ....................... TGGTACAATAGACCTAGACATTAAGTAAAATAATAAGTTTGT 11862 23 100.0 42 ....................... GCAGGGGTTCGCTAACGGTACACCTGATATAGAAGGTTTAGT 11797 23 100.0 44 ....................... GGTGTCATTTTACCATTTAAGGATAAGTTCCCTAAAAGTTTAGT 11730 23 95.7 42 .......C............... GAGTCTAGTCAGTAACTCAGTAGTTTGTCCCTCGTGTTTAAC 11665 23 95.7 41 .T..................... AATTGAGCTTAATCCTAACGATGATAAGGTCTTTGTTTACC 11601 23 95.7 42 .G..................... TCGTGTATGTAATCACCATCAATATCCCGATATTCGTTTACC 11536 23 91.3 44 .T..G.................. CGTTTAATGTGTAATTTCTATATCAAAGAAGGACTTTGTTTACT 11469 23 82.6 0 .TA........GG.......... | ========== ====== ====== ====== ======================= ============================================ ================== 8 23 95.1 43 ACTAACATAAGATGTATTTAAAT # Left flank : CGATGTAGTCAATGCGGATATATTTGTAAAGAAAATCGTTGTACACAAGCTACGTTTGAATGTAAGCAGTGTGGATATAAAACACATGCTGATTATAATGCGGCGAAAAACATTTCTACTTATGACATCGAAAATATTATAAATAAACAATTAGCGGTACAAAGCAAATTGCATTCAAAAAAATGTATGGAAGAGTATATAGAAGAGTTAGGATACCTGGATTAATGTAGGTAATTGAGTCCATATTAAATAATTTGGTGGATTTACACGCCATAAATGGAGAAGTAGCACATAAGAAATTTACCAAGTGCCAACACTCCGTAAGGTAGTATCAAATGTAAATAAGCATTGATGCGTGGGCATTTTTCATGCTCTGAAGGGTGTAACACAAAGACCGTTACACAGTACATCTATTTGCTGGTAAAATAATGTTTAATGTCCATCTTATTAGTTTTTTCGCATCTGTTAAAGTATCTATCTTTATTTTATCGGGGTTTGGT # Right flank : AGGTTTATAAAAATCATTAAACTAAGCTAAGAAAGTGAATTTTATCAATACGAGTTTTTTCTTTTACATATTAAAATGGAAGTACCCTTTCAATGTATACTGACCCCTTCATAAATTGTGAAGGGATTTTTTTATTCAATAAATGAGTTTTACAAAATATACAAAATGTTAAACTTATAAAACCCAGTGATATCAGTAAGTGTGCATGAAATCACTGGGTTTTTATTTGGATATTTAATGGTGTGTGTTACAAATTATAAAAAGATATAAACTTAGTTTTACTTTTTAAATATTATCCGTCCTAAAAAATGGCCAATGTTCATAAAGGTACAACTTTCTGGACACATACAATGGAGGGTTGTATCAAAATTCTGATTATTCAACTATAGAATCGCATAGGATATATATATATTTCTTTACATTCATTATTTTCAGAAACATTACAAAGCTGTCAGATAAATGAAAGGTTATTCAATATGAAAAAGAAAGTATGTGCATTA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 23622-22540 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVJZ01000013.1 Bacillus toyonensis strain AFS059543 AFS059543_73_C1_Contig13_140411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 23621 32 87.5 34 .........T..A.T......A.......... TTAATACATTATTTATAATTCAACTAGATGTTTA 23555 31 87.5 34 ...A....C...-......T............ TAGAAAATGGTCAAGAAGCTAACCTATTAGAATA 23490 32 93.8 34 ............A.T................. TTTTTAATGAAAGTATCTGATTTAGCTTGTCTAC 23424 32 90.6 32 ........C.....G....T............ ATCTATGTAGCCCCTCCACAATTAGATTGAAT 23358 31 78.1 34 ...A.....T....T..-.GA..A........ CAGTGTTGCTACGCTTAGTCGGCATCCCTCGATT 23293 32 78.1 34 C..TT.A......CTA................ ATTCCAAAGAACAACCATAAAAAGGCTGTAGCAA 23227 32 96.9 33 .......T........................ TTTGAAGCGGCTGTTGAGAAGTATCCAACTAAA 23162 32 87.5 33 ............A.TT.G.............. TTATTAAGTGCTACTGAGATTCCAGCCGTTGCT 23097 32 90.6 34 .........T.........T.T.......... ACATGAACGTTCATATCTTTCTCCCTCATCATCC 23031 32 100.0 33 ................................ ACTACACCATCTTTTTAATGTACTGTGTGATAT 22966 32 87.5 34 A..........A.......T.T.......... ATTTAAAATCTTTTCAACCTGATCTGAAACATCT 22900 32 84.4 33 .........A.AAG.......T.......... TATGCATGATATACACTTTGGGACGAATACCAT 22835 32 93.8 34 ............A........T.......... ATTATAGAGTCAACCTGCTCAGGTGCAAGCGCTC 22769 32 96.9 33 ............A................... GAACGTACAATTGATACAAAATCACTTGCTACA 22704 32 93.8 36 T...........A................... AATGCAGGTGGAACACATTTACACTATGTAGATCTA 22636 32 78.1 33 .........A.CC.T....T.T.....A.... TAACAATTATCAGCGCCTAATCGCTTTCCTAAC 22571 32 81.2 0 .C.A..............C.AT.........C | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 88.6 34 GTCGCACCTCTTGTAGGTGCGGGGATTGAAAT # Left flank : GATCCGATCGATATTACTAGTATGCAAATTACGAAAAGTGTAAATTCTGAGCCTGGGAAGGATAAAGGTTCAGATACGATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGCAGTATTAATACACAATTAGCAGAAAAGACAGGCTTTACTAACGAGGATGCGGAAAAAATTAAAAATGCACTTGTTACATTGTTTGAAAATGATGCTTCAGCGGCACGTCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGAGCATAATTCAAAACTTGGCCAGTACTCGTCCGCAAAAGTACACCGTTTACTGGATATTAAACGGAACATTGATGAACCTAAAACAATTGATGACTATACCATCTTGATACATGAACTAGACGGTTTAAGAGTTGCGATTATTGATGGACTATAATAAAAAAGCATTAGAATAGTTGAAAGAAAGTATACTTATAAAGTGCTACTCTATCAATTTATTAAAGGAAA # Right flank : CATTTTGAGCTACCTACTGCTTAATATATAACATTTCATATTTCGACTCTTATCCTTCTCCTGCTCATCTTTCGAATTTTCTCGACGTTTATTCAAATGAAAATAAAAAAGCTGAATCCCTTCTCACAGAAGAGGTTTCAGCTTTTAGTTTTTTAATCATACCCTTTGCAACAAGGTGCAATTATATTTCAGTGTATCCGCACCTTGTAGCTATTATTATGTATGCTATATTCCACAAAATAATTACAAAAACTCTATTATTCTCTCCATCTATTTTTATTGTATGCACCAACGGGAAGACATATGCACCATCCTCGGTGAATGTGTATAAATTACATTGAAAGTGTCAAAAATAACAGTTAAATAGGATTAAAGAAAGGAAGGCACTTTCATGAAAGGAAAAAAGAAAAATCGTACAAAGCTTGGAAAATGGTTAGATCAAAATGGAATAGAACAACAGGAATTAGAAAATGCAACTGGTGTTAGTCGTAATACAATTT # Questionable array : NO Score: 6.32 # Score Detail : 1:0, 2:3, 3:3, 4:0.43, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.13, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTGTAGGTGCGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [19-40] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //