Array 1 993-1798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPRA01000052.1 Amycolatopsis mediterranei strain HP-130 IW14_Contig0258, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================= ================== 993 28 82.1 33 ..TA.......ACG.............. CACGATGCCGCGCTCGACGAACACCTCGTTCCC 1054 28 100.0 33 ............................ CTCGGCCAGCACCCGGCGGAGGTTCCGGATACT 1115 28 96.4 33 .........A.................. GATCGATTCGCTGAGGACCTCCGGCAGCACGAT 1176 28 89.3 33 ............C..CT........... GGTGAAGGGCCTCTCCCCGGCCGGGCAGCGGTA 1237 28 100.0 33 ............................ CCACACCGGCAAGCCCGAGGCGATCCTCACGCA 1298 28 92.9 33 ........T....T.............. CGACACGACGGCGAGCCGGTCGTCGCGTTCCTT 1359 28 92.9 141 .......................CC... CAGGACGTCGCCGGACTCCCCATCGAGAGGCGGGCTACGCCCGAGAAGGCCCGCCCGACCTCATCACCGCCGAGTCGTCCCGTCAGTAGCGAAGTGAACGAGAAACACTGTTTCCAATGATAGATTCGCAGGTCAGCAAGT 1528 28 85.7 33 ..T........ACG.............. CTGCACGACCGGCCAATCGACCGCCTTGTAGTC 1589 28 82.1 33 ..T........ACG...A.......... CACGAAGTAGATGCCCGCGTGCTGGATGGTGAG 1650 28 89.3 32 ..T........AC............... CATGCCGGTCACACCGCTCGGATGCCGCCGTT 1710 28 89.3 33 .........A..C......A........ TTGGGTGGCCGACTTCCTCGGCCTGGACAAGCT 1771 28 92.9 0 ............C.........C..... | ========== ====== ====== ====== ============================ ============================================================================================================================================= ================== 12 28 91.1 43 GTCGTCCCCGCGTACGCGGGGCTGGTCC # Left flank : TTGCATCTGGGCTGTGAGCAGGGTCAGAAGCCGTTGTCGATCGTATTGACCGCCGGGCAGCGTGGCGACAGCCCGCAGTTCATTCCTGTCCTGCGTGGTATCCGGGTGCCCCGGCTGGCCGGTGGTGGGCGGCCGCGCACCCGGCCGGATCGGGTGCTGGCGGATAAGGCTTACACCTCTAAGGCAAACCGGGCTCACCTGCGCAAACGTGGGATCAAGGCGACCATCCCGAGCAAAACTGATCAGGACGCGCACCGCAAGGCCAAGGGGTCGAAGGGCGGCCGGCCACCGGCTTTCGACCCCGAAACCTACAAGCAGCGTCACGCCGTGGAGTGCGGTATCAACCGGCTCAAACGCCACCGCGCCGTAGCCACTCGTTACGACAAACTCGCTGTCCGCTACGAAGCCACCATCCACATCGCAGCCATCGACGAATGGCTCTGACCGACTTCGATACAGGCCCTAGGTCCCGGCTGCCCGATCCAGTGGTGCCAGTCGTC # Right flank : CGGCGGAGAGCGACAATAGCTCTCCGCCGAGAGCACTATCTGAACTGCGTTCGCTGCCAGTTGGGGTTAAAAGTGAGGTAACCGTGCGGATGCGCAAGACTGTCCGGGTGTTACCTGACATGGACCGATGGCGGCAACTCATCAGTGAGTACGGGCAGCTACAGCAGCTAACCGGGCACACACCTCAGACACGTGGTCAGCGCTTCAACAACATGATCGCTGAACTCCTACAATGTTGGGGCATCCAGGCCACGGCCAATGTCCGAGCCGCCGGCGAGATCGACGTCGCGTTCGCCATCGACGGCGTCCGCTTCGTCGTCGAGGCCAAGTGGGAGAAGACCAAGGCGGACACCGGACGTATCGCCAAGCTGCAGAAACGCGTCCGGCAGCGCTTGTCCGGCACCTACGGTGTATTCCTCTCCATGTCGGGCTACAGCCCAGAAGCTCTCGACGATATAGCCGACGGCGACCGGCTCGAAGTGCTCCTCCTGAGCATCGAA # Questionable array : NO Score: 4.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.92, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTACGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9877-10873 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPRA01000048.1 Amycolatopsis mediterranei strain HP-130 IW14_Contig0254, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 9877 28 82.1 30 .GTT........A..C............ TGTCGTGTAGCGGGTGTCGTCGTCGTTGGG 9935 28 85.7 30 .A...TT..C.................. CTGCCCGTGGCGGAACCTGATCGTCACCAA T [9942] 9994 28 85.7 33 .C......AT................G. CGCGCCTTCGTCCCAGCTGGCCGGCTCGACGAT CT [9998] 10057 28 85.7 30 A.TT..................G..... CAGGGAGATCGACACGTCGGACAGCGTTTC 10115 28 89.3 30 .CG..T...................... CGGAAGCCGGTTGAGCTTCGCGCCGCACCG 10173 28 85.7 31 TC...T................C..... GCAGGCCGACTACGAGAAGCAGAGCCCGCAG TG [10179] 10234 28 82.1 33 .AGC......T..........T...... GATCCCGCAGTAGCGACAGGTGTCGCCGTCGCG 10295 28 82.1 31 ..TT.......A.G.A............ ACACGATCGGCGGTTTCACCCGACCTTCGCG 10356 28 96.4 33 ........................A... CGCATTGGCTAGATTGTTCTGGAAAGTCTGATC 10417 28 89.3 33 ..T..............T......A... CGTCTCGAACGTCGTGGGCGAGACGACGTGCTC 10478 28 92.9 33 ..T..................T...... CGACTTCAAGCTGCGCCTGGTCACCCTCGGCGT 10539 28 96.4 33 ............A............... GCCGTTCGGGTCGCACTCGTACGTGGGCAGATC 10600 28 100.0 33 ............................ CGTCACCTGCCCGCCGGGCTACACCAGCCTGTT TG [10623] 10663 28 92.9 34 ...............A..A......... GGACGGCGTCAAGAACTGGTACGACGAAGTGGCA 10725 28 92.9 33 ........T..A................ CTACGTGTACGTTGGCGCCTACGGAACAGGAAC 10786 28 100.0 32 ............................ CGCTCGGGCAGCTCAACCTCGCCACTGTCTAC 10846 28 85.7 0 C.T..T...A.................. | ========== ====== ====== ====== ============================ ================================== ================== 17 28 89.7 32 GTCGTCCCCGCGCACGCGGGGCTGGTCC # Left flank : GTCTCCGCGCACGCGGGGCTCGTCCGCGCCGAGCAAGCGAAACAGCGGCGACAAGATCGAGTTGTCGCCGCACAGGGCTGGTCACCCACCCGACTGCGCCAGGTCCCGTAGAACGGGTCACCCCCGCAGCCTCGAGGCTGGCCCTATCATCGACCCCGTAGCTGCTGGAGCGCCAACAGTCCCCTCGTCGCACGCGCAGGCAGATCCTGACAAGTTGGGCGATAACTTCAAGGAGGTAACGAGCGTCCTTGATTACCGCCAACTATTTCTCCGCAGCAGAGACGTGTGGGTGCGACGCAGTTCCTTGCGTCGCGCCGACCGTGAAGCATCCGGAAGACGCGATGACCACCGGTCTGGCGGGCGCTCACTGGAGGGTGTCACGGTGAACACCGAACAACTTCGTCGACTAGGCAAGATCAGCATCGGCAGACGCTGCGAACACCCGAGCCAAACTGAATAGAAAACACTGTTTCACTTGGTAGAGTCGCAGGTCAGCAAGA # Right flank : CCTCGATCGAATGTCCGAGGAATTTGACGCGGCCCCGGCACCGGCTGTCGAAGTCGTTGCTGCGGCAGGGTTGCTCTATGACGGCACTGCATGGACCGGGGCACTGAAGCCTGGCTGCGGTCGCTGACCTTTGACCGGGTCGGGGTCCGGCTGGCCTTCGAGGAGGCCTTCGACGCGGTGCTTGCTACGCGGGCTCAGCGGGCCCGGCTGGACGCTGCGATCACCGAACTGGCGGCGCCCCCGGTGTTCGCGCCGGTTATGGGGCGGCTGGCCTGCCTGCACGGGGTAAGCACGCTGACCGCGTTCGGCCTGGTGACGGAAATCGGGGACTGGCGGCGGTTCACCGGTGCGTCGATCGGCGCCTACGTCAGTCTGGTGCCCGCGGACTCTTCGAGCGGTGAACACCGTCACCAAGGAGCGATCACCAAGACCGGTAACTCCGATGGCCAGCGGTTGCTGGTCGAGGCCGCCTGATACCACTGCAAACGCTACCGGCTCAG # Questionable array : NO Score: 4.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11700-11972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPRA01000048.1 Amycolatopsis mediterranei strain HP-130 IW14_Contig0254, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11700 28 96.4 33 ........T................... GGGAGCACTCGCATGACGACCACGGAGCCGGCG 11761 28 100.0 33 ............................ CTGGTTGATCCGGATGTCCCAGTCGTCCACCGC 11822 28 100.0 33 ............................ CACGGTGGCGGTGGCCTGCTGATACTGGGCGTC 11883 28 100.0 33 ............................ AGACGGTTGGGGCAACCTGAAGGCGGCCGGCCT 11944 28 89.3 0 ..C....................A..A. | G [11961] ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.1 33 GTTGTCCCCGCACGCGCGGGGCTGGTCC # Left flank : GACTGGCGGCGGTTCACCGGTGCGTCGATCGGCGCCTACGTCAGTCTGGTGCCCGCGGACTCTTCGAGCGGTGAACACCGTCACCAAGGAGCGATCACCAAGACCGGTAACTCCGATGGCCAGCGGTTGCTGGTCGAGGCCGCCTGATACCACTGCAAACGCTACCGGCTCAGCCGGGAGCTGATCCGCCGCCAGGACGGCCAACCACCGGCGGTCCGGCAGCGGGCGGAGGTCGGCAATCGGCGGCTGCACTGCCACTGGACTCGCTTCGAAGCCCGCAGCAGACGCCCCGCCGTCAGCGCGGTCGCCGTCGCCCGGGAACTGGCCGGCTGGTGCTGGAGCCTCGCCACCCATGGAACCCGACACGGGCTGACTCCCCCGAAACCGCCGGCGGGAGACCGGCATGCGCAGACAGGCGCGAGGAACGACCCGCGATACAGCGATGAGCAGCACCGTCCCCAGCGAAAGTGCAATACTCGCCCCAAGACAGGTCAGCAAGT # Right flank : CTACAGGGCTAGATCTCTAACATCTGGAGCCGGAGGCGGCGTCTGACGTGGTGTCGTCGGGCGTCCGCCTGGTGTTCGCGGCGCCAAGCAGACCAGCGAAGGCCGTGGTCGATGGCGTGATCATCTTTGTCGGCGAGGTTGAACAGGTGTCGGATCTCGGCGATGGTGAGCGCGATCAGGTGCCGGGTTCGGGTGGTCAGGGTGTCCGTTCTGTCCACAGGTGGAGTTCTTCTTTTTTTGCTTTGTGTCTCATGACTGCGAGGAATGCCATGGCGAGCATCGAGAGGGTGATGTGCCGGTACCAGGCGTGGTAGAGGCGGACCTGGTAGTTGTCGAGCCCTGCTTCGTTTTTGGCTGCTTCGAAACATTCCTCGATCGGCCAGCGGGAACCGATGACGCGGACCAGTTCCGTCAGCGGTTCCCGGTGCGGGTTGTAGCAGTGAAAGTAGGCGATTTCGCCGTCTGCGATGTTCCGCCGGAACACATACTGGTGACCGTCG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCACGCGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //