Array 1 39-1775 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYW01000011.1 Salmonella enterica subsp. enterica serovar Monschaui strain 2009K2058 NODE_11_length_126715_cov_2.57483, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39 29 100.0 32 ............................. ATGGGCGCATATAACCGCGCCCTGAAACGAAC 100 29 100.0 32 ............................. CGCGACGCGCGTGGGAGGTTCGAAAAAGAGAA 161 29 100.0 32 ............................. CCGTCGCCGTCGCAGCTACCGAAGCCGTAGCC 222 29 100.0 32 ............................. GCGATCAACAAGCTGGAACGGCAGTATTTAAA 283 29 100.0 32 ............................. CAAGTGAGGTTGCATTTAGTGTTGCGACAAAA 344 29 100.0 32 ............................. TATGATTTCTTGCGGAAAATTCAGTTTTTGAG 405 29 96.6 32 ............................T TCATCAGCACAGACGTTAATTGATGCCAATAC 466 29 100.0 32 ............................. CAAACGATGCAATCATCGGCATGTTGTGCTCA 527 29 100.0 32 ............................. GTGCATTCCGGCAACATAATTGAGTTTGCCAA 588 29 100.0 32 ............................. CGAGCACTGGCTAAGATGCCACTGTTGAAAGT 649 29 100.0 32 ............................. TTCTTTGGGTACGATACCGGATGGCGCGCCAA 710 29 100.0 32 ............................. TTGCCGGTTAATGGCGTGGCGATGCCTGACAA 771 29 100.0 32 ............................. CGTGAAATGGGGCGGCGCATGAACATTAAATT 832 29 100.0 32 ............................. GCTGATACGCAGACGATCACGAGCTATCTGGG 893 29 100.0 32 ............................. CAAAACGATCCCAGCGCTTACGTTAAATTTAA 954 29 100.0 32 ............................. GCTCTCTCGATGCTGAAGCCAGTGAAGGTATT 1015 29 100.0 33 ............................. CTGACGGGGTGCATTTCTCAATACCGGTGACAC 1077 29 100.0 32 ............................. CTCATAGAAAAATGGGACCCACGTTTCTTTAC 1138 29 100.0 32 ............................. GTAAAAACGGCGGCTGATCTTCCGGTAAGTAG 1199 29 100.0 32 ............................. TCCACGTGCGTGGTCAGTTCCCGTCATCGTCA 1260 29 100.0 32 ............................. GAGGGCTGGATGAGATTAAAAGCGGGCGGGGT 1321 29 100.0 32 ............................. GCGGCGAATATCATGATCGTTGTCCCGATCAG 1382 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 1443 29 100.0 32 ............................. GTTGGCTGTAGTGTTGCAACGCTTGAGGAAGC 1504 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 1565 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 1626 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 1687 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 1748 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAACCGCACGTTTAAAACGTGCAAGTTTTATTTTTCGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17936-19796 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYW01000011.1 Salmonella enterica subsp. enterica serovar Monschaui strain 2009K2058 NODE_11_length_126715_cov_2.57483, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17936 29 100.0 32 ............................. GCCGAGACATTTTCCCGGCACCAAATTGATAT 17997 29 96.6 32 ............................A TGTTTGATCCGGCATTTGTGGCGGGGTGAGCA 18058 29 100.0 32 ............................. GCCGCAGAAACCTGGCTAACCGGCACCGAGGC 18119 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCACTA 18180 29 96.6 32 ............................C GTAAATTTTACTGTAATCAATTGTGCTGTCCC 18241 29 100.0 32 ............................. CTAAAAATGGATGTGGCGCCGTAGGGGTTTGC 18302 29 100.0 32 ............................. GAGCGCAGGGATGAATTACGATCCACGCAATA 18363 29 100.0 32 ............................. AATTTCCGGTTGAGCACCAGGAATACATCAAC 18424 29 100.0 32 ............................. CGCAGGGGCGCCCGCTGTGGCTCCCGGCAGTG 18485 29 100.0 32 ............................. GGCGGTTAAACCGCCCTTTCTCATATTTTCCA 18546 29 100.0 33 ............................. TTCCCCGGCAATCTGTTTCAGTGCTACTGGGGC 18608 29 100.0 32 ............................. CCTTGATTTTGAACCCGCTGGCGAACTGGATA 18669 29 100.0 32 ............................. GCGCAGCAAATTATTACTATTACGTTAACTGA 18730 29 100.0 32 ............................. GCTGTATTTATCGAATTACGCTGCGAGCTGCG 18791 29 100.0 32 ............................. AAAACCCGCGAGGCTAATCTGACACAGGCGCA 18852 29 100.0 32 ............................. GCTATAAATGGCTGGTCGAGGCTAACGAATAT 18913 29 100.0 32 ............................. CAACCAGTGGCCTGCGCCAATCACCGAAGATT 18974 29 100.0 32 ............................. CATCGACTTCGGCATAGCGGATTTCTAAGCAG 19035 29 100.0 32 ............................. TTCCCGCGATGGGATAGCTCAATCAAAATCAG 19096 29 100.0 32 ............................. GCTCTCAGTTTGATGGATGGGAAAAAACGCTT 19157 29 100.0 32 ............................. GCGGGAAACTAAACAGGGCCACGTTTGCGGTT 19218 29 100.0 32 ............................. GTATTGCGCCGCCTGGTTGAGCGTTACGCCGA 19279 29 100.0 32 ............................. TTTCATGACCGATGAAGTGACAACCAACGACG 19340 29 96.6 32 ..............T.............. TTATATCCCCCCTCCTTGACGTTCTCTTCGGT 19401 29 100.0 32 ............................. GGACGAAAACGACGTCCGCTGCGTAAAAACCC 19462 29 100.0 32 ............................. AACTAGCGCCTGCTCCGGACGGCTTGCCCTCT 19523 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 19584 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 19645 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 19706 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 19767 29 93.1 0 A...........T................ | A [19793] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGATTGTGGTCACAGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //