Array 1 624579-624172 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDZN01000001.1 Pluralibacter gergoviae strain SN86A38 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 624578 28 100.0 32 ............................ ACACCGCGTTTGCGTATGATTCCCCTGGATAA 624518 28 100.0 32 ............................ TAACATTCGAGCCAGGTCGGCCTTGCGCGTGC 624458 28 100.0 32 ............................ TGGCAAAAGACTACGGCGTCGCGCCCGATCCA 624398 28 100.0 0 ............................ - Deletion [624371] 624370 19 57.1 32 ---------TCA................ AAAGAGCCAACAAACGTTGCCTACCGGGGATT 624319 28 96.4 32 ...........C................ ACCGAGCTTCGTGACGTGAAAGCACAGCACAC 624259 28 96.4 32 .............G.............. AGTTACAGCCGGGAAATGTTTACATCGAAGTT 624199 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 93.7 28 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCCGTTAGGCTCGCGCAGCGCGGCCTCCGGCGACGGAAAGGCGATAGAATGACGTGACAGCTGAACCAGACGCATGCTCTACAACTCCGGGCCTGATAATGAAAGAAAGCGTAGCCTAAACTCGCTGTCTGAACTGGTATTACGCCCGCGTCTGCTCAGCTATTTGGCGTGCTTACCATGCGAAAAATTTAGCGTGTTGTCTATCACAATTATGTGGCAACAGCGGCAGTTTTTTGCAGTGCGCGATTTCATCGCCCGGATGGAGGCGCCAGTGGCGGAATCATCTGCGTTTAGCGGGCACATGCAGGCAGGCGCCGGTCAGCCGGGAATTAAATTTGGCAGATTTTTTCTCAGGCGATGCGTTGAGCAGACCTTTTTTTTCCGCTGTTGCTAAGTTATTGATTTATTGATGCCTGATTTGCAACGATGAAAAAAGGTATTGGCGCAAAATTGAGGGTAATTCTTTTTTGAAACAGTGCGCTATAGCGATTACCCTCTA # Right flank : ATTTTCCCCCTGATGGCTTAACTCCACTGAAACTATTGGGGATATGAGTGAGACGTAGCGATCACAGTGAGAGGCGTCAATTTTCAGACTCTAACCTGTAGAAGGATAGTCTGTTTCAGTGTAGTTTGAGGACGCTTATACAATGCATTTGTTAGCCACTGAGAAAATGAGATGACGCTTCATGATTACACCGTTAAGTCTTGCGATGCTATATACATAGAAGATATACCTTGTATCCTCCATCCCAACATCGCATATCGCTATCTGGAATACACCGGGATGCAAAACAGAATTATCCAGGAGTGGGATTTTCCTTCCGGTTATAAGGCGTATGCCGATCAGTATCGCCATTTTCATATAAACCATCCATTTATGGCATATCGCTCTGCTCTTAATGATATTAAATCGGGAAAGATTATACTGCTGAAAAGCCTTCATGGTGGTAAGGAAATATTTAGTGTTCAAACACGATCTGGTAATTTGTGTACAGATCTCCCATT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 627792-626263 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDZN01000001.1 Pluralibacter gergoviae strain SN86A38 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 627791 28 100.0 33 ............................ CTTAACCTGAGTTCGATTTACCGGGCCGATAAA 627730 28 100.0 32 ............................ TCTTGTGACCGGACAGCACAAGCTGCTTGTTG 627670 28 100.0 32 ............................ GCTAAAAGATGACGAGATTGAGGTTCCATTTT 627610 28 100.0 32 ............................ ATCAACAACCCAGCGAGCACCAGAAGCGCAGT 627550 28 100.0 32 ............................ GTTATCAGGATTGGTATATAGCTCAAACACCC 627490 28 100.0 32 ............................ TGATGCGGGGTATGCAGGGGAACGGGACAGTT 627430 28 100.0 32 ............................ ATTGCGCAGGGCATCGTACAGACCGTATACCT 627370 28 100.0 32 ............................ AGCATGCAACATTCGTTGATACACAACGTGGC 627310 28 100.0 32 ............................ GGCTGCTGAATACTACCCCTGAGTTCGACAAC 627250 28 100.0 32 ............................ GCCCCGGTATCCGTCCGAAATTGCCAGGTAAA 627190 28 100.0 32 ............................ GTTGGCTGTCGTATGAGGCCCAGGGCTATTAC 627130 28 100.0 32 ............................ TATTTCCAGGCAACTGCCAGTACCCGGGCGAA 627070 28 100.0 32 ............................ TATCAAATCGCCAGTCCCCTGCAGGAGAAATT 627010 28 100.0 32 ............................ TACAGCAGCGGCAGAAACTCTGCCGCCTGATT 626950 28 100.0 32 ............................ ATTACGCCACCTCCCTGTAACTATGCCTGCGA 626890 28 100.0 32 ............................ ATCAGCCATCGTTCGCCCCCTCTGAACAGGGA 626830 28 100.0 32 ............................ AGCAACAGTTTCACAAGAACCTCGCCAATTTT 626770 28 100.0 32 ............................ TCAAGGAAGCGGTTAAGCCCGCCGAGGCTGAA 626710 28 100.0 32 ............................ TTCAGTACGCCGGCAGCTTTTGCCTGCTCGTT 626650 28 100.0 32 ............................ ATCGCCGACAGCCTGGCTGATGAGCGGTTAGG 626590 28 100.0 32 ............................ CCGCTCGATGACGTAGCTCATGGTGCCGTAGC 626530 28 100.0 32 ............................ TACCGTTGAGTTCAGCGCCGGATAACCGTCAA 626470 28 100.0 32 ............................ TACCGTTGAGTTCAGCGCCGGATAACCGTCAA 626410 28 100.0 32 ............................ AATATGGACGAGGTCGAGTTCCAGCATCTGTA 626350 28 100.0 32 ............................ GATGCCTTTCCCTTGAGCATTTACGGATATGC 626290 28 78.6 0 ....T................CCCA..C | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGTGCGGAGATCGCCGCCGTACCTGCGGGCGCCCGGTGGCGTACCGTCAGCCGCGCGCAGGTGAAAAGCAGTCCTCAGCGCCTGATGCGCCGCTCGGTGCGCAAGGGCTGGATTTCGCAGGCGGAGGCCGATCGGCGGCAGGCAGTTACGCCGGCCCGAACGCTGAATCTCCCTTATCTGAATCTGAAAAGTCTCTCCAGCCAGCAGCACTTTCGCCTGTTTATCGCCCACGGCGAGCTGCGCCCGACACCCACGGCAGGAGCGTTTAGCAGCTACGGGCTAAGCGCAACGGCCACCGTTCCCTGGTTTTGACCTTACGGACCGCGGTTTTCGCCGCGGCCTTTTCTTTATTACGTTGCGGTTATGAAAACCCTTTTTTTGAGCAATGATCTAACGTATTGATTTTATTTAACTGAAAACGTGAGGTAAAAAAGAGGGTAAAACATGGTTTTTGGGCGTTAATGGTTTTGTAACAGTGGGATAGAGCAGTTTTACTCTT # Right flank : TCCGGACATAAAAAAGCCGGGAATTGACCCGGCTTAGCTTTTCGACTACCCCACGGGCATCAAATCAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATATAGTTTTTACGCATTTTACCGGAGATATGCGCGGTAACTACGTGACCGTTTTCCAGCTCTACGCGGAACATCGTGTTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCGGGGGTATCACTACCATAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGATTTACCGGTCATCTTTCCGCATACGCGGCGACCGAAATCTTGAGATCGTTTTTGCGCATTGCCCGAACGTCGCACAGATACCGTGAGACGAGCGCAAACCAAAGGGGAGATTCCTGAAACGTCGGCAGGGCAACAGGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 637810-636999 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDZN01000001.1 Pluralibacter gergoviae strain SN86A38 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 637809 28 100.0 32 ............................ ATTGACCAGAAGATGAAGCTGCCACTGATATC 637749 28 100.0 32 ............................ CATTGCCGCCCGGAGTCCTCCGGTGGAACCAT 637689 28 100.0 32 ............................ TTACTCGAAGAGCATTCGAGATATCAATTATT 637629 28 100.0 32 ............................ TATCGCTACGGCTCGCATAGAGAAATATCTGC 637569 28 100.0 32 ............................ TGGCGCTGCGGCTATCGGCCTGCTGATGCATG 637509 28 100.0 32 ............................ TAAATGGCATTGGTCATCCGAAAAAAGAGTCA 637449 28 100.0 33 ............................ GTCGGTTTCGGGACCTTCAAAGTGAACCACCGC 637388 28 100.0 32 ............................ TTTGGTTTTACATGGTTGTATTTTAAAGGAAT 637328 28 100.0 32 ............................ AAGCCGCTTGACTCTCCACGCTTCTGACTTCA 637268 28 100.0 32 ............................ TCAAGCCAATAAGCCTACTCTTTTCTTAACTT 637208 28 100.0 32 ............................ GATCAATTCGGCGGGCCGCCTGTTGTGGTTGT 637148 28 100.0 32 ............................ AGGAGTGGCTCGACAGAATCGGCAGCAAAATT 637088 28 100.0 33 ............................ TGCAGTCAGGAAAATGCGGACTGATAGCAACAA 637027 28 89.3 0 .......................CTC.. | A [637001] ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCAGGAAGCGCGCGACTGGCTGGCGGAGAAGGGCTACGACCGTGCGATGGGCGCCCGTCCGATGGCCCGCGTTATTCAGGACAACCTGAAGAAGCCGCTGGCCAACGAGCTGCTGTTTGGCAAACTGGTGGACGGCGGCCAGGTGACGGTCGATCTCGATGCCAGCAGCAATACGCTGACCTACGACTTCCAGGCGGCGCAAAAGCGCAAGGCGGAAGCGGCGCACTGAGTGGCGGAAGCGTGACGACAAACCGGGCGAAAGCCCGGTTTTTTTATGTTTGTGGCCCGATCCGGCGGCGGTGAAAACGAATATAAAGTCGGTATGCCGTTATCTGGTTTTATGAGCGAATGCGCTGCCTGCTTTTGCCGACCCTTTTTTTATGCGGGTTGGTAACGTATTGATTTTCAATATGCATTTCAGGTGGTTATAAAAAAGGGTCTGCGGCACCAGAATCTGTTTTTTCTGTTTTATAACAGTGTGATAGAGTGTTCGATGGTCA # Right flank : CATAACCCATTGACCACGTTCCTTAATGAGTGCTACCACTAGACCAAATTCGGGAAGCATTACATCACGCCGCGAGGGAATCATGCAGATCCTGCCATCAGATTTAAAAACCATCCTCCACTCCAAACGCGCCAATATCTACTATCTCGAAAAATGCCGCGTGCAGGTCAACGGCGGGCGGGTGGAGTATGTTACCAGCGAAGGCAGCGAGTCCTGCTACTGGAATATCCCTATCGCCAATACCACGGCGGTTATGCTTGGCATGGGCACCTCGGTGACGCAGGCGGCGATGCGCGAGTTTGCCCGGGCCGGGGTAATGGTCGGTTTTTGCGGCACGGACGGTACGCCGCTGTATGCGGCCAACGAAATGGATATAGATATCTCATGGCTTTGTCCGCAGAGCGAGTACCGGCCGACAGAGTATCTGCAGCAGTGGGTCTCTTTCTGGTTTGATGAAGAGAAGCGGCTGCAGGCGGCAAAGCGATTTCAGCAGGTCAGAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //