Array 1 272352-273356 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPNC01000001.1 Nocardiopsis sp. FIRDI 009 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 272352 29 100.0 32 ............................. CGAATGGCTCCCTCCAGGGGGAGGGGGCCGAC 272413 29 100.0 32 ............................. ACGCCCGGTGCCGAATCGGCGGGACCGCAGGT 272474 29 100.0 32 ............................. GCGCAACGCAGCGGGCCGCCCTGGCAGTCCAG 272535 29 100.0 32 ............................. GTGGCCGACCACAGCTGTGATGCCGTCCGCTA 272596 29 100.0 32 ............................. CTCACACGCTTCATCAGATTCTGGATGACGTC 272657 29 100.0 32 ............................. GCACCGGGAAGGTCGGCTGATGGGGAACACCA 272718 29 100.0 32 ............................. TCCATCACCCGCGTCACCCGGCTGGGTGGGAC 272779 29 100.0 32 ............................. ATCCGCATCTGGACCGCCGACGGCCACTACAC 272840 29 100.0 32 ............................. TCCGCGTCTACCCCGGGCACGCCACCACCGGG 272901 29 100.0 32 ............................. TTGTGATCTAGACCGTTAATCGCTGCCTTAAC 272962 29 96.6 33 ............................T GGAGGGCGGACGAGGACGAGGAATCCGCGTCCG 273024 29 100.0 32 ............................. ACGTCGTCACCTCCCTTGTAGAAGAGCCGGGG 273085 29 100.0 32 ............................. GTCCTGTGGCTCTGGTTCCTGTTCGCCGAGAA 273146 29 100.0 32 ............................. CTGGTCGACGTCGCCGCCCATTACGGGATCGA 273207 29 100.0 31 ............................. ACCTACGGCAAGTGGGCGCGGGACGCTATCA 273267 29 100.0 32 ............................. GCGGTACCCACGTTGGGGATGGGCTCGTGTAG 273328 29 72.4 0 ...........GC.T..A......CCTG. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.2 32 GTGAGCCCCGCAGACGCGGGGATGGACCG # Left flank : TCGTGGCGTATGAGCTGTTGATGCGGGAGTTTCGGGCGACGGGAGCGTACGAGGTGCGTTCGCAGCCGATTGGTCCGTCGCCGACGGGGAGCAGACCGCGGTGGGCTTTGGCCGTAAGGAGCGTTGGGGGCGGTTGATCGAGCAGCGGGGGCAACGGGATGGTTCGAGTCGTCGGCTTCGGTGGCTCGTGTCGTGTCGAGGTAGCCGTGGCCTTGGGGTGACCTGTGTTGCCGGGTATTCGTGCGGTTCGGAGGGTTTCGTTGGGGATCTTCACGGTGGTTGGGAGAGGTGTGTGCCCCGGAGATCCCTTGGCCCGCCTGATGGGGTGGCTTTCTTCCCGTGGCGGTCCCTTGGGTGTCATGAAAGGGTGTTGGGGGTGTCCTACTGGCAGGTGTTCGAGTTCGTGTTGTGCGAGGGCGGAACCGAGTAGTGCATGGTCCTGTCGCCGTTATCTGATGTTGCGGGAAGATAACGCTTGGCGTTGTTGCAGGTCATTTGCT # Right flank : GGGTCAGCGGTTGGAGCACCTCAACCATTGACGTTGGCGGTGGAGCTGGAGGAGGTTCCCGAGGGGCGCTACGGCGTCTCTTCGAGGCGTTCCGGCTGGAGGCCGTCTACGACAAGCGGTCCAACCGCGCACACATCCGGGTCACCCTCGCGGGGGAGGCCCTGGAGGAGTCCGTTCAGGCGGCCAGACAGGTCGCCGACGCCGGAGAAGGATCAGAAATGAAGAGATGGGAACCCTCGAAGAGTGTTCCCATCTACCAAGTGCCCCCTGCAGGATTCGAACCTGCGCACACGGCTCCGGAGGCCGTTGCTCTATCCCCTGAGCTAAGGGGGCGCGCTGCGAGAACAACTGTAGCAGGGGCTCCGCGCGGTTCGTCCAATCGAAGGGCCGCGCCCCCCGCGCACCGCGCCGATCGAGCAATCCAGTGGTGCCCTGTCGTCCCACAGCGGTAGTGTCGCGCCCGTGAACGCCCTACCCGCACGGGTTCTCGTCGTCGAGGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCAGACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 45084-45266 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPNC01000011.1 Nocardiopsis sp. FIRDI 009 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 45084 37 100.0 37 ..................................... CCCCACCCACACAACCACCCCCCAGGAACAGACCACC 45158 37 100.0 35 ..................................... CTCCCTTCCCTGGGGCGTGGGACCGGCCCGTGGCC 45230 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 100.0 36 GTGGCGGTCGCCCTCCGGGGCGACCGAGGGTCGCAAC # Left flank : GCGAGACGGTGGAGTCACCGTCCGATTCCGACGCCGTTCCCAGCGAGGACGCGGTGTCCGGTGCTCAGTCGCGAACGTACCTGCGGGTGGTCGAACCGTCGGACAAGTCCCAGGGTGTGACCGTGCCACCGGTCCAGATCGAGGCGTGGCGGTGGGCTTTGGACAACCGCAGCGATAGCGGTGAGCTGCCCAGCGGTCGGGAGATCGCGGAGCGGTTCGGGCGCAAGGACCGCTGGGGCAGGTTGATCAAGCAGAAGGGGCAACGAGGCGACCTTGGCGGTGGGGCTCCGGCTTTGGTCGAAAGGAGTCCCGTCGTGGTGGGGTGAGCGTTACTCTCAGCGTGCGTTGCGGCAAGCCGGGAGGGGGAGGTTGGGAACCAGGAGTGATCATGAGATCCCGGGGAGGTTCCCAGCTCGTTTTCGTCAGCGGTGGGGAGTAGTGTCCGATCTCGAATGAGCGCGTGGCTCTGGTCCGCAGGGTGTTTGGGCAGGTCGCGCGCT # Right flank : CGGCGTGTGGACACGGTCGGCCACGTCCAGGGCCACCGGGTGGCGGACGCACCCCCCCGCCGCGAACGCCGCGTCATCAAGCTCCGCCACCTCAACCGGTGGGGACCGGCCCGCATCACCGGGCACCGGGGCATGCACGCCTCCACCGTGCACCGGATCCTGACCCGCTACCGCTGCGCCCGCCTGGCCCATACCGACCGGGCCACCGGCCGTACCGTGCGCCGCTACGAGCGCGCCCGCCCCGGCGAGCTGGTGCACGTGGACATCAAGAAACTCGGCAACATCCCCGACGGCGGAGGGCACAAAGTCCTGGGGCGCCCCCAGGGCTGCAAACACCGCACCAAGGCCGGGTACGCCTACCTGCACAACGCCGTGGACGACCACTCCCGCCTGGCCTACTCCGAGATCCTGGCCGACGAGGCCAAGGAGACCGCGACCGGGTTCTGGGAACGCGCGCACGCCTACTTCGCCTCGCTCGGCATCACGGTGGAGCGGGTGCT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGACCGAGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 167756-168579 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPNC01000021.1 Nocardiopsis sp. FIRDI 009 contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 167756 29 100.0 32 ............................. AGGGCACCGGGATTCCCGGCCAGGCCCCTAAT 167817 29 96.6 33 ............................A GGTGCGCTCGGTGCCGTCGGGCAGCCGCAGTGG 167879 29 100.0 33 ............................. CCGAGAACCTCATCGACCAGTGGGGGCCTGCTC 167941 29 100.0 32 ............................. CAGGGCCGCGGTCGGATCGGACTGCTGGGCGT 168002 29 100.0 32 ............................. CCGACACCGAGGGCATCCCGGACGACGTCGCC 168063 29 100.0 32 ............................. GCCACCATGACCGACACCCCCACCCACAAATG 168124 29 100.0 32 ............................. CGGCCCCGGGGGGCGGTGCGGTCCTCCAATGC 168185 29 100.0 32 ............................. GCAGCCACAGGCCCGTAGAAGGCGGACAGCAC 168246 29 100.0 32 ............................. AAAGCCCGCGCGTTCCTGTCCGGCACCGGAAC 168307 29 100.0 32 ............................. AAAGTGAGCATCACCACGAAGAAGAAGGAAAA 168368 29 100.0 32 ............................. TCCCATCACCTCAGCCAGACGCAACCCCATGT 168429 29 100.0 32 ............................. CCGATGGCGGCCGTGGTGGCATTGCCGAGAAC 168490 29 96.6 32 ........G.................... CCAACGGGCGGCTCGAACTCTTACTGCATCGG 168551 29 79.3 0 .....TT....G.........G...G..T | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.0 32 GTGAGCCCCGCAGACGCGGGGATGGACCG # Left flank : CTGCTTCGAGCGGCGAGGTGCGCGGTGCGCGCGGCCGTCGCTGGAGCCGCGCGCGGGCCGTACCGAACCGCCGGATCTCGCCGGTCCCCGGGAACGCCGATGGCCGGAGCGTGAACTCCGTCCGGCCATCGGCGTCTGTGTGGGCGATACAGGATTCGAACCTGTGACCTCTACCGTGTCAAGGTGGTCACGGCGTTGGGGCGACCCGCGTCGACAGGCATCCGTCGATCCCTCGGCCTGCCTGGCATGGTGGCTCTCTTCTCGTGGAGATCCCTCGGGCATCATGGAAGGGTGGTGGGGAGGGAGCCCCTCCGATGGCCACGATAGGTCGGCGTTGTGGCCTTACTTGTGCTCATGGGGGGAGCGTAGCGGTGGTGTTCTGTTCGCACATGTTCGAGTTTCGCGTTGTGCAACGGCGAACCTGAGTGGTGCACGGCCCCTGTCACTGCTATCTGGTGTTGCGGGAAGATAACGCTTGGCGTTGTCGCAGGTCATTTGCT # Right flank : TCAGGTGTATCGACAGGTGTGCCCCCGCCGATCGGCGATCTGGAGCCCCTGCTGGCCCCCGTCGAGGTCGTGGTCATGTTCCACGTGGCACCCATGACGGTCACGTGGTGGGCCAGGTCGGGAAAGCTGTGTTCGTTCCGCACTCTGGGGGTGGCCACCGCCGCTACTGCGAGGCCGAGGTGCGTTCCTTCCTGAACGGAACCCCACGGGTCTGGCGACTGACGGAGGTTGAAGCCTCGGGTCGTGGAACGACTGCACGGTCGGCTTCGCTGATCCCTGCCGCCGGGATCGACGCCGCGTCCATGACCTTGTTGAGCGACGCGCGCCACGGCCGACGAGACGGTCTGCTGCCGTGGAGGCTCCTGATCCTCGGATCCAGCGCCTCCCTCGCCGCCAACGTCGCGGTTGCGGACCCCACGGTGTGGTCGCGGATCATCCACGCTTGGCCGTCGTTCGCGCTGATCGGTGCCTACGAGCTGCTGATGTGTGAGTTCCGCACG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCAGACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 169789-170489 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPNC01000021.1 Nocardiopsis sp. FIRDI 009 contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 169789 29 100.0 32 ............................. CCTCGGTCTGGAGGAGCGCGGGCACCACCTGC 169850 29 100.0 32 ............................. GCGATACCGCTGAGCAGGTACTTCACCGCTCC 169911 29 100.0 32 ............................. CAGTTCCCCGTGGTGACCCTTGGGCTGAGGGG 169972 29 100.0 32 ............................. CCGCTGCCGAAACTCCGCGTGCTCCCGCTCGA 170033 29 100.0 33 ............................. TGCTCCCCGCCGTCGTTGTACGCCCGCTTGCAG 170095 29 100.0 32 ............................. TAGCCGGGGACTCCACCCCCGATACGAGGCGG 170156 29 100.0 32 ............................. AACATGGGCAACAACCTCCAGCAGCTCACCTT 170217 29 100.0 32 ............................. CGTAGGGCGGTGAAGGCATGAAGGGCTGGCAC 170278 29 100.0 32 ............................. AGGTGGATGCCTGGTGGGTGCCGGTACTCCTC 170339 29 100.0 32 ............................. AGGTTGTCCCACGCCCGCCGCATGCTGTTGCG 170400 29 96.6 32 ...............A............. CTGTTCCAGGCGACGCCCAACCGTCTCCCACT 170461 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGAGCCCCGCGAACGCGGGGATGGACCG # Left flank : GAGGCGTGGATGTGGGCTCTGGAGAACCGGAGGGCGGATGGTTCGTTGCTGATGGGGGAGCAGATCGCGGTGCGCTTCGGCTGCAAGGAACGCTGGGGGAGGTTGATCAAGCAGCGGGGGCAACAGGGCCGGTTCGAGCCGTCGGCTTCGGTGGTCCCTGCCGTGCCAAGGTAGTCATGGTCTGGGGGCGACCTGTGCCGACGGGTATCCGCGCAGTTCAGAGCGTTTGGTTGTGGGATCTTCGCGGCGGTTGGGAGAGGTTCGCGTCTCCCGGAGATCCCTCGGCCCGCCTGGCATGGTGGCTCTCTCTCCGTGGAGATCCTTCGGGCATCATGAAAGGGTGATGGGGATGGAGCCCTCCGATGGCCACGATAGGTCAACGTCGTCGCACATGTTCGAGTTTCGCGCTGTGCAACGGCGAACCCGAGTGGTGCGCGGTCCTTTATCGCCATCTGATGTTGCGGGAAGATAACGCTTGGCGTTGTTGCAGGTCATTTGCT # Right flank : CGATGGTCGCGCCGCGCTGCATGACCTCGCCCGTGAGCGGAGTGTGTCAAGTCGAATCGGACAGGGGCGAGCGATCGTCAGGTCGCTTCGCGCAGGTCAGAGCCCTGACGCGCGGCGGGTGCGGTCTCCAGTTCGTTTGGCTCGTTGATCCACGCGGCCTCGGGAAGGCCTGGCAGGGTGGGCCGGCGGGTGAACCGCTGCGGGTTGGCCGCGCGGAACGCCTCGATCGCTTCGGCCCGCTTGTGCTGGATCGCGTACGCAGTCCCGGTGTGGACGGTGAAGGGCGTGTGCAGCCCGATCCCGGAATGGTAGTGCTCGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGAACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 257846-256841 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPNC01000006.1 Nocardiopsis sp. FIRDI 009 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 257845 29 100.0 32 ............................. GGCCTTCACTGATCGGTGGGTGGACTCCCGTA 257784 29 100.0 32 ............................. ATCAGCGCGCCGGACAGCCCGGTGTACGCGGC 257723 29 100.0 32 ............................. TCGACCCACCAGCCTCGAACGCGGGATTCACG 257662 29 100.0 32 ............................. GAACGTGAGATCCTGATACGTAGGAACGCCCG 257601 29 100.0 32 ............................. CCATCCGCGCGAGGGAGGTCGCCCACACCAGC 257540 29 100.0 32 ............................. TCACCACCGGCCTTCGCACCGCGCCCGAGGCA 257479 29 100.0 32 ............................. TTGCGGGAAGACTTTGTTATTGGAGTCTGGAC 257418 29 100.0 32 ............................. GTCGTCTCGACGGTGGTGGCGCTCCACACCCG 257357 29 100.0 32 ............................. CCATCTGGGACATGGGCCGTGTCCCCGACCCC 257296 29 100.0 32 ............................. CTCAATCGCGTCGGATAGGACATTCCATAGCT 257235 29 100.0 32 ............................. CCCGCCGGACCTCCCATCCGGCATCTGTCCCA 257174 29 100.0 32 ............................. TCGGCGCCGGCGACCACGATCCGCCACGACTG 257113 29 100.0 32 ............................. TCGATCGAGTCAAACAGATCCTCGATCTGGGG 257052 29 100.0 32 ............................. AACACCACCACCGGCACACCAGCCGCCTCCAA 256991 29 100.0 32 ............................. GCCGACCCCGAACAGCTCGGATGGTTCGGCAA 256930 29 96.6 32 ........G.................... CCAACGGGCGGCTCGAACTCTTACTGCATCGG 256869 29 79.3 0 .....TT....G.........G...G..T | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGAGCCCCGCAGACGCGGGGATGGACCG # Left flank : TGTGCCGGAGGAGCCCGGCGCACGCCCTGAGGTGAGTCGCGTCGTCGGGCGGACCCGAGGCGGGCCGAAGGGACCCCGCGAGGCGGAGACCCGTGTCCGGGGCCCCGGGGTTTCCGCCCGAACGAAGAAACGACCCGGCGAGGCGGCCGAGGGCCGCCGAGCAGGATCGTTCCGGAATGAAGTGGGCGATACAGGATTCGAACCTGTGACCTCTACCGTGTCAAGGTGGTCACGGCGTTGGGGCGACCCGCGTCGACAGGCATCCGTAGATCCCTCGGGCATCATGGAAGGGTGGTGGGGAGGGAGCCCCTCCGATGGCCACGATAGGTCGGCGTTGTGGCCTTACTTGTGCTCATGGGGGGAGCGTAGCGGTGGTGTTCTGTTCGCACATGTTCGAGTTTCGCGTTGTGCAACGGCGAACCTGAGTGGTGCACGGCCCCTGTCACTGCTATCTGGTGTTGCGGGAAGATAACGCTTGGCGTTGTCGCAGGTCATTTGCT # Right flank : CAGGTGTATCGACAGGTGTGCCCCCGCCGATCGGCGATCTGGAGCCCCTGCTGGCCCCCGTCGAGGTCGTGGTCATGTTCCACGTGGCACCCATGACGGTCACGTGGTGGGCCAGGTCGGGAAAGCTGTGTTCGTTCCGCACTCTGGGGGTGGCCACCGCCGCTACTGCGAGGCCGAGGTGCGTTCGTTCCTGAACGGAACCCCACGGGTCTGGCGACTGGCGGAGGTTGAAGCCTCGGGTCGTGGAACGACTGCACGGTCGGCTTCGCTGATCCCTGCCGCCGGGATCGACGCCGTGTCCGGTGATCCTGTGTGCCTGGAGTCCTGCTCCGGGTGCACGGGGGCTACGTGTTCGGGAGTGATTCGGTGGTGTCGCCTGTCGACCACGGGCCAGGAACCCAGGAACGCGGCAGGCCCTCGTTCTGGTGTCAGAGTACCTGGACACGACGAAAACGGGCTCCCGGGGGAGCCCGTTCCGAAGGTGATGCTGGTGGGCGATA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCAGACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 285141-284136 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPNC01000006.1 Nocardiopsis sp. FIRDI 009 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 285140 29 100.0 32 ............................. ACGCCCGGTGCCGAATCGGCGGGACCGCAGGT 285079 29 100.0 32 ............................. CCCCCACCGGAGGGTCCGCCCCCTACTGCCGA 285018 29 100.0 32 ............................. CGGGACGGGCAGACCCGGCGGTGGATGGTGCC 284957 29 100.0 32 ............................. CCTACGAGCGGGCCCGTATCCGCGCCGACTTC 284896 29 100.0 32 ............................. CCTACGAGCGGGCCCGTATCCGCGCCGACTTC 284835 29 100.0 32 ............................. CCGTCCAGTTCGTCATCGGAGGTGGTGGTGAC 284774 29 100.0 32 ............................. AACCCCCCGTGTCCGGCCTCAGCGACGACCTG 284713 29 100.0 32 ............................. GGCGACACGTACACCGTTCCCAGCGCCCTTGA 284652 29 100.0 32 ............................. GCCGTCGACCAGGCCCCCACGGACCCGGAGGG 284591 29 100.0 32 ............................. CCAACGCACTCCAGATCGCGACCGGCGACCCG 284530 29 100.0 32 ............................. GACATGGGCACCACCGCCGAAGACGAGCAGCC 284469 29 100.0 32 ............................. ACGACTTTCGGGCCAGGAGAGCGACCTCCTGG 284408 29 100.0 32 ............................. GTTTTCGCGATGGCTGTAGTAGCCACTGACGG 284347 29 100.0 32 ............................. ATGTCGTACGTGGCGTTGTGGCAGATGACCTG 284286 29 96.6 32 ...............A............. GCCGACACCATCCGAGCAGCGCGCACTGGCAC 284225 29 96.6 32 .................C........... AAGGGCGGCCGTCCCTCCAAGGGCGACCGACA 284164 29 86.2 0 ........G..G.........G......T | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.8 32 GTGAGCCCCGCAGACGCGGGGATGGACCG # Left flank : TGGCGCGTCGTCGACCTGTGGGACCCACAGCGTGGGGCGGTAGCTGGGGGAGTCAACTACGGAGACCAGGCAGGGAGCCCCCTGGAGTCTCCGTTCGACGATCTGGGAGAGGAGCCCGGCTGATGGCGGGAATGGTCGTGATCTCGACGACGGCGGTTCCGCCACATGTCCGTGGCGCACTGACCCGCTGGATGGTCGAGCCACAGGCAGGGCTGTATGTCGGCACGATGGCGGCTCGCGTCCGGGACCGGCTCTGGGAGCTGGTGAGCGAGTCCGTTGAGGAGGGGTCTGCTGTTTGCGCGCACCCAACCGACAATGAGCAAAGGTTCATCGTGAAGACGGCCGGGGAGAGTCGCAGGGAGGTCGTCGACTTCGATGGGCTCCAGCTCATTCGGTTCATCGGAGTCACAGACGAGGAGGACGACGCGTCGACGGCGAGTCCTCCCCCTGAGGAAATATAACGCGAAGATAACGTCCTGTGTTGTTGCAGGTCATTTGCT # Right flank : CAGGTGTACCGACAGGCGTGTCCCCGCCGATCGGCGAGCCGGAGCCCCTGCTGGCCCCCGCCGAGGTCGTGGTCATGTTCCACGTGGCACCCATGACGGTCACGCGGTGGGCCAGGTCGGGAAAGCTGCGTTCGTTTCGCACCCTGGGCGGCCACCGCCGCTACTGCGAGGCCGAGGTGCGCTCCTTCCTGAACGGAACCCCACGGGTCTGGCGACTGACGGAGGTTGAAGCCTCGGGTCGTGGAACGACTGCATGGTCGGCTTCGCTGATCCCTGCCGCCGGGATCGACGCCGTATCCGATGATCCCGTGTGCCTGGAGTCCTGCTCCGGGCGCACGGGGGCTACGTGTTCGGGAGTGATTCGGTGGTGTCGCCTGTCGACCACGGGCCAGGAACGCGGCAGGCCCTCGTTCTGGCGCCAGAGCGCCTGGACACGACGAAAACGGGCTCCCGCGGGAGCCCGTTCCGAAGGTGTTGCTGGTGGGCGATACAGGATTCGA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCAGACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //