Array 1 360791-362543 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCG01000005.1 Listeria monocytogenes strain ICDC_LM0402 LM0402Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 360791 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 360857 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 360923 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 360989 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 361055 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 361121 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 361187 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 361253 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 361320 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 361386 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 361452 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 361518 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 361584 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 361650 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 361716 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 361782 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 361848 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 361914 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 361980 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 362046 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 362112 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 362178 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 362244 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 362310 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 362376 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 362442 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 362508 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 6166-5401 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCG01000013.1 Listeria monocytogenes strain ICDC_LM0402 LM0402Scaffold12_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6165 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 6099 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 6033 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5967 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5901 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5835 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5769 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5703 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5637 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5571 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5505 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5439 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5404,5407,5412] ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : | # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //