Array 1 165297-160264 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMCN01000001.1 Methylomonas methanica strain S-1 Ga0299759_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 165296 29 100.0 32 ............................. CCTTTCGACGTATCCAGCGCTTCTAGCACCAC 165235 29 100.0 32 ............................. GCCGTGCAAACAGCACTCGATTTAATCAACAT 165174 29 100.0 32 ............................. CAATCAAACCCAGACCTTACGGATGAAGAGCT 165113 29 100.0 32 ............................. TATTCTGTCAGTGTGCCAAATTGGACTGGCCC 165052 29 100.0 32 ............................. CGCACATGGGTACAAATTTATTTCAGACGCGC 164991 29 100.0 32 ............................. CATCGGTTGTTGCCAGGTTTCGATCAAAGCTG 164930 29 100.0 32 ............................. AGAACGTGCCGTAGTTGGTCGTATCCTCGCCT 164869 29 100.0 32 ............................. CCACTTGTGTGCCAGCACATATTCACGCGCCG 164808 29 100.0 32 ............................. CTCACCAGACGGAATATTTACGTCTATAAAAT 164747 29 100.0 32 ............................. CCGGCGATGTGATAGAGCCGTTGCCATCTGTC 164686 29 100.0 32 ............................. GCCGCAAACGCCTGGGCGGGCGCTTGCTGGAG 164625 29 100.0 32 ............................. GTCCGCTGGCTAGCAAGCCAGGTCCGGAGCGA 164564 29 100.0 32 ............................. CCAATAACATGCTCGAACAAACCGGCGGCGCG 164503 29 100.0 32 ............................. TACGGGCGCGCGATATGCACGGCCGCTACAGC 164442 29 100.0 32 ............................. TATTGTTCACATGTTTTAATTTGCCTTGGTTC 164381 29 100.0 32 ............................. ATTCGACTAACTATGGCACCTTTTCTAGTGGT 164320 29 100.0 32 ............................. GCGTGAGGGCAGATGAATCTGAAAGTAGAGCA 164259 29 100.0 32 ............................. CATTGCCAGTGCGAGTCAATGAGTTTGATCCG 164198 29 100.0 32 ............................. TAGCTGGTAAGTAAGTCATGAAATACACCTTC 164137 29 100.0 33 ............................. TCGTTCAGCGCCGGCTGCGGCGGCATCGATTTG 164075 29 100.0 32 ............................. GCGACTCGCGTGTTATCAGCGGATACCCAGTA 164014 29 100.0 32 ............................. CGTTTTGCATCTATGCAAGCGTGTTGCACAAT 163953 29 100.0 32 ............................. GCCCACGCAACACCGCCGGTACAGCGGCCAGG 163892 29 100.0 32 ............................. TGGTTGTGCCAGGCGAAGATCCACAACAACCC 163831 29 100.0 32 ............................. TTCTGCACGGCGGTGGTGCCTTCGTGCTCGTC 163770 29 100.0 32 ............................. CCAATGGCATTTGTCAGGCCGCGAAACGCATT 163709 29 100.0 32 ............................. GTCGCCAAATTACGTTACCAATTTCCCCTACA 163648 29 100.0 32 ............................. ACGGCGGCGGTAGAGTCGATCTGTTGGAGGCT 163587 29 100.0 32 ............................. ATATTGCAGCCGATGTTCCTTATCCGCATTCA 163526 29 100.0 32 ............................. CAATTGGTCGAGAACGTCACGGCTGATCATTT 163465 29 100.0 32 ............................. ATGATTGCTCGGCTGATGAAATCCACCAGCAA 163404 29 100.0 32 ............................. AAGAAAGAAGCTGGTTCATCCCCACTGACGTG 163343 29 100.0 32 ............................. GCATGTGGGACGTTACCACGATTTGGGCCGCC 163282 29 100.0 32 ............................. CCCATCATCACGTTAACAATCTTGCGGCTAAA 163221 29 100.0 32 ............................. TCATCCTGCAAAAAATCCTGGGTGAAATGGGC 163160 29 100.0 32 ............................. TCGGAGCCTCCGACGGGATCGCCGCCATTAGC 163099 29 100.0 32 ............................. CAGTCATCAAACAAGAAACCGACCGACGCGTA 163038 29 100.0 32 ............................. CACGAAGGCCAGCTGACAGCGGACACCCAACA 162977 29 100.0 32 ............................. TCTTGAAACAGCATAGGCAAGGTCATATAAGC 162916 29 100.0 32 ............................. GCATTTATTACCCAGCAGGAGGTGGCCCTGGC 162855 29 100.0 32 ............................. TCGTCGAGCCATCGCCTGCACCAAATGTGGTG 162794 29 100.0 32 ............................. TCACCGAGCTTGAAATCGGCAACGAAGACGTG 162733 29 100.0 32 ............................. CCGCCGGCGGCGGCAGCATCCGTTATCAGACC 162672 29 100.0 32 ............................. GCCGCGTGGGCGTCCTGGGACACTTCAAACAA 162611 29 100.0 32 ............................. CCCCGAAAAACGACATATCCGGCATTACTCCC 162550 29 100.0 32 ............................. AAATGTCTAGAGCTTCGCAAACATCCTTGGCA 162489 29 100.0 32 ............................. ACGTGGTATTGCAGTTGCAATGACTCGGTGCA 162428 29 100.0 32 ............................. CCAACGCCGTTACCAACCGCCCGTGCAGGCCG 162367 29 100.0 32 ............................. CGTTGGCTGTGCGGATATAGCCATAATAAATA 162306 29 100.0 32 ............................. CCTTGAAGACCATCTTTCGGCGCTATCACATG 162245 29 100.0 32 ............................. TCTTCGGCGGCAATGGCGAGGATATTGGCGAA 162184 29 100.0 32 ............................. TTTGGTGGTTAACGACAAATATCCCGCGAATC 162123 29 100.0 32 ............................. TCCTTGCTGCCGATGTTGCCGACCGGGATGAT 162062 29 100.0 32 ............................. CCGCCGTCATTCGGCATATAAGACGCCGGAAT 162001 29 100.0 32 ............................. GAGGCCGTCAAAACCCGGATGGCCGAGGATAA 161940 29 100.0 32 ............................. TACGCGGCGATGGACGCTAAAACCGAGTGGGA 161879 29 100.0 32 ............................. CCAACCAACACAATATGCGGCAACAGATACAG 161818 29 100.0 32 ............................. CCCTCGCAGCATCGGACGCACCAACTGACGCC 161757 29 100.0 32 ............................. GTCAAAATGATCGGCTTCGTTCGCCTGGTCAT 161696 29 100.0 32 ............................. CAATAGCGGCGTCACTCGGACCGATTGAACAA 161635 29 100.0 32 ............................. TCATCAACGGCATTATCAAGTTACCCAAGGCA 161574 29 100.0 32 ............................. ACGCCAAGGGCGAATTAAGCAAGCGCGCGCTG 161513 29 100.0 32 ............................. TAGCCGGCCCGAACAATCGCAGACCGATTGAC 161452 29 100.0 32 ............................. TCACCGTGAAAGCCGCCGGCGTCGTCGTCGTG 161391 29 100.0 32 ............................. GGTTCGCCTGATATGTACGAGCCGAAAACCGA 161330 29 100.0 32 ............................. CAATCGAATATCAATTGCTCGATGATGGCCAG 161269 29 100.0 33 ............................. GGGTATGCCGCACCGACGAACTGTACGAACAAA 161207 29 100.0 32 ............................. GTGATTTTGCCGACTCGATAGAGCGCGCTGCA 161146 29 100.0 32 ............................. CTGATTTTGAATTTCGTCGTAATGCTTCTGTA 161085 29 100.0 32 ............................. GCGGGGCGGGTTTCCGGAGCTTAACCGAGGCC 161024 29 100.0 32 ............................. GCCGTCAAGGACCGCCCGTTTAAACTGATCAC 160963 29 100.0 32 ............................. CGGAGATGATGAAGCTGGTGGTCAACCGTCCA 160902 29 100.0 32 ............................. CCCTTGGGTTCGTTAGAGCCCAAGAGTGGTTG 160841 29 100.0 32 ............................. ACTTGGTGCAGCTTAACGTACCGTTGTCAGGT 160780 29 100.0 32 ............................. GCGCGTGATGCTCTGTCAGCCGGCGGCACTAT 160719 29 100.0 32 ............................. ACTTTGAACCGGTACAGGCACCGGCGCCTATC 160658 29 100.0 32 ............................. TCCGGAGGATGCCGCCGAGTGGGCGGTCAATG 160597 29 100.0 32 ............................. CGCGCGGATGGCCGGATGAAACGCGCCGAAGC 160536 29 100.0 32 ............................. CGACTGGGGTTGTTAGGGTCTTGTTCGCAGAA 160475 29 96.6 32 ...........................A. GCTGGCACAACCTTTGCTGGCTAATTGGTACA 160414 29 100.0 32 ............................. ATTGCGACCGACATGATGCTGGCTGATGAGCT 160353 29 89.7 32 ..............T........T....T TACGCCATCAATATGGCCGATTCTAAAGCCTC 160292 29 93.1 0 ..............T........T..... | ========== ====== ====== ====== ============================= ================================= ================== 83 29 99.8 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CGGCCATTCCTAACGCGGAGAGCATCGGAGATGTTGGTCATCGTAGTTGAAAACGTTCCGCCTAGGCTGCGTGGGCGCTTGGCGGTATGGCTAATCGAAATTCGCGCCGGTGTCTATGTCGGCGATTTGTCGGCCAAGGTGCGCGAGATGATCTGGTCGCAAATCGAGGATGGGCTGGAAGAAGGCAACGCGGCGATGGCTTGGTCCACCAACACCGAATCGGGTTTCGATTTTATGACATTGGGTAAAAATCGCCGGCTGCCGGTAGAACTGGACGGCTTGAAACTGGTGTCGTTTTTTCCGCCGGAAGATGCCGAATTGTCTCCCTCGCCCTCGGAGAGAGGGCCGGGATGAGGGTGAAATGCGCACTACATTCCTGTTGGGGCATAGGGCGCTGTAAGGGCTTTCGTCAGCTTTTTAACAACTTGGAAAATGCCGAAAAAATCGGTAGAAAATTAGACGGGTTGTTTCCGTTTATCTAACAATAAGTTAGGATTAGT # Right flank : CGACATAGGCGGAGCGATTGGCTATGGCCTTGGCGATCCCCCCCTGCGGGGATAAACCTTGAGTCCCGAAGTTTGAGGCATTCGAGCGGGGATTCTAGGTATGTAAACCAAATACGTTCGATAAGGTGGCGAATTAATAAATTGAAGTTTTTAGTCGGGTAAAGGTACGCGAAGGCGAATGTCAAATATCCTGTACAGTCTTAAGCAACTTTACGTGCATGACATAGTTAGGATTCATGCCGGGCGTGAGATCAAAGCGGATGGGGGGTGTCAAAATGGCGCGCCCGAGAGGATTCGAACCTCTGGCCTCAGCCTCCGGAGGGCTGCGCTCTATCCAGCTGAGCTACGGGCGCAATGTGATGTGCGGTCAATCAGTACAATCTTTCGGTCAAGCGGTATGGACCGTTACCCTTATCCCGAAGGACTGTTCCCGCAGGGCCAATCAAGTAGCCTAGGGGGGCATCTAAGGTAAGAGCGCCATTATAAGATTAAATGCCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //