Array 1 810-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDUO01000040.1 Leclercia sp. LK8 40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 809 28 100.0 32 ............................ AGCACCGGCACCAGCAGACACACCAGCGCCAC 749 28 100.0 32 ............................ TCAAGCGTCGTCATTACCCGGTTCGACATATC 689 28 100.0 32 ............................ TTGGGGGCGTAACGGGGGCATGTTGGCAAGTA 629 28 100.0 32 ............................ GAAAGGTCGAGGGCAGTTTTAATGCCCATGGC 569 28 100.0 32 ............................ TTTCACTACCAGCACGCGGCGCGTTCTCATCG 509 28 100.0 32 ............................ ACCAGGTTTATGGAGCCAATCAAGCTGCGGCG 449 28 100.0 33 ............................ AGTTTGAAGATGTCATGCTGGAGAAACAAAACC 388 28 100.0 32 ............................ AAACAGCTGGCGTCTACGTCTGTGCAGACTCG 328 28 100.0 32 ............................ AGCAACGCTCGGGCGCATTCGCTACATCATCA 268 28 100.0 32 ............................ GGTAGTAGTCCAGATCTTCGGATAACGTGTCG 208 28 100.0 32 ............................ AGCTCAAAGCCTGGAGTAGTGAAAACGAGACG 148 28 100.0 32 ............................ AGCTGCAATGTGTTCTCAATTTCCCATCGCGT 88 28 100.0 32 ............................ TGACAAGGCGTTATCTGGATTTTCTCCTGTGG 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCGTACAGGCAGCTTAGAAATCCGGCGGTGAAGTGGTGCGTACCCTTTACCA # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15039-14891 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDUO01000019.1 Leclercia sp. LK8 19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15038 28 100.0 32 ............................ TTCCCAAATGTTCGGATACTCGTCCGGGTAGT 14978 28 100.0 32 ............................ ACGAATGACGCTCCCCAGGCAATGCAGATTCT 14918 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCGTACAGGCAGCTTAGAAATCAACATCAGCGACAATAACAACCGCTACT # Right flank : GCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCGAATGCCGAACAGGCAGTAGGTACAACGTAGGCCGGGTAAACGTAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGATCGAAAGCATAACCTTTATGCGAGGACGAGATCACCCTGTGGATGGCACGAGCATGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAACGTCATGGTGCTGGTGACGGTGTACTCCCCGGAAACCACCTTCGTTTTACAGCAGCCGCACACCCCGGCGCGGCAGGCCGCTACCACCGGCACGTGGTTGCTTTCCAGCGCCTCCAGCAGCGTGGTTCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTAAACGTAATCCCGCTGGTTGCTGCTTCCGCCACCGGCGTGAAAAACTGCTCTTTGAAGAAGCGGGTCACGCCGAGCGCTTTCACATCTTCTTCCACGATAGCCATGTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-208 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDUO01000074.1 Leclercia sp. LK8 74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 100.0 32 ............................ CGTCAATCGTGGTGAGCTGTGCGCTCGACCCG 61 28 100.0 32 ............................ TATTTACGAATATTACCCCGATGATGGCTGGA 121 28 100.0 32 ............................ AGTTAGAAGCGCTTTTAAAGGCACTTAATACG 181 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 35 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //