Array 1 499280-499552 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLJ01000007.1 Bifidobacterium asteroides strain ESL0198 Ga0133551_107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 499280 29 96.6 32 ............................T CCCGGTCGGAGGTCTCGGGGCCGTCCCAGGTA 499341 29 100.0 32 ............................. TGATAGCTCTTCTTTCGGGGCTTGGCTGGCTT 499402 29 96.6 32 ............................A TACTCCTGCCATGCCACCTGCCGGTCGCTCAA 499463 29 96.6 32 ............................C ACGCATAAGCCATCACAGGTCGCAAAGCTCAC 499524 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.0 32 GTGTTCCCCGCATCCGCGGGGATGATCCG # Left flank : CTGGTGAGATGGGTGGCCATCAGATGGGAGGTTCCGACACTGCCACGCAAATCTCACAGTGGGTGGCCAAGCACTATACCGCAACCACGGTTGACGGCGTCACTGTGTATGATCTGAGCCAGCAGCAGGCCAGCTGAGCGCAAAGAGGGCCGAACTATCCAAAAGCTACTCCCTCCGTTTGCGGTTACAGGATAAAGACGAGACGAGCTACTGACTTCTAATTTGTCGGTTGCGAGTAGTTTCCTCGTTTGCGCGTTGAAAAAGTGCAAAGCAGCTAAGAGCTAAGCAGTGAGTGGATTGGAACTATCCCAGCCCGCTCATTTCTTATTGATCAATACAGGATGGTATTTGTGTCCGATTAGAGCAAGACTAGTTATTGCAGACCAAGGCACTTCAGGTCAAACTCAATAGCGTTATTGATTTCATTACGCTGGTCTGCGTTGCATTGGTTTGCATTGCACGGTAGTAGATAATCCTTACAAATGGAAGGATTTCTAAGT # Right flank : GCCTTCTGGAATGATCGTCTTCCGAAGGTGTAGTACATATCCAATATATGGACAGATATTGCCAAAGTGACAATTCTCTAGCATAATTCTCTTATGCACAAATCATGCATTTTGTTGCGACGGTAAAGGAACCGCCATGACACATATATCTTTGAAACAAAAGCTATTTCCGGATGGGCATGGTACCGCTCTGACGCGAATGGCTGGGTTCGTGTTGGCGATGCAGTTGCTGGATGCCTTTTCTGATGTCCAATAAACCAATAGATATTGCTGTCAGCTTTTTCGGACTAGCGTTAGTCCTTGCCCATATTATATCGTTTGTTACTGATTCACGGTTCTGGGCTTTATGCACTTATCCAGTGGCTTGGGTGGCGATGATTATCTTTATGGCAATAGAACGCCGAGGGAAACACGATAAAGACTAGCGTCATTTGAAGATGCTGAAATGTGTGAGTTGGGCGAACTGCCACATGTTTTATAGTTCGCCCTGTTCGCTTTTC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATCCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 214891-207967 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLJ01000009.1 Bifidobacterium asteroides strain ESL0198 Ga0133551_109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 214890 29 96.6 32 ............................C CACGGGTGGATGCTTTGTCGATGCTATTGCCG 214829 29 96.6 32 ............................G CACAAGCGCCCCCGCCTCCGACAAACCGGAGA 214768 29 96.6 32 ............................A TGTAAGTTCTTATGTACTCTGCTCATCTTTTA 214707 29 96.6 32 ............................G GTCGCTATGTAAGCGCGCACCCTATCGGTATC 214646 29 100.0 32 ............................. GTCAGATCGAGCCAATTACTAGGTATCCCCTC 214585 29 100.0 32 ............................. GGGCTAGTGCTGGCGCAAGTGGCACAAGGTGT 214524 29 100.0 32 ............................. TGCACCAGTATTACAAGCTGGGCCGCGCCGTC 214463 29 96.6 32 ............................G GACCTGGAGCGTGAATACTTGGGCTATCAGCA 214402 29 96.6 32 ............................G TACATGCTTATATCCAGCTGGGTCGTGGTGGC 214341 29 96.6 32 ............................C TGGATCTGACTACCCGTGTATAGGTTGGTGTA 214280 29 100.0 32 ............................. CTTTGGAGAGGTCTTCGACGGTCTGTGCGATG 214219 29 96.6 32 ............................C ATGGCCGCCCACCTGTCGTACGGATGCAGGCT 214158 29 100.0 32 ............................. CGTCGGAAATCGTCCGGTATTTGCCGAAGTCT 214097 29 100.0 32 ............................. TTGTCCCATACTGTCAAGAGCAGCGGCTGTAG 214036 29 100.0 32 ............................. CGTTTTACGCCGGTCATTATCATAAGGGACGT 213975 29 96.6 32 ............................C CATGTTGGACACGTCAATCTTCCGTCCATCGG 213914 29 100.0 32 ............................. CGCGTTCAGGAAAGTGCAAACGGCAAAATTGC 213853 29 96.6 32 ............................C ACTGTCGGGTCGCCTTGCGAGATATCGAATTC 213792 29 96.6 32 ............................C GTCAGGTGGACAGCATAGCGCCCGATTCCCAA 213731 29 100.0 32 ............................. GGGTTGACGGCGGTGATTTCGTCGGACCGCAG 213670 29 100.0 32 ............................. AGCTGCCGACAGTTTATTAGCCTCATCCTTGC 213609 29 100.0 32 ............................. GTGACCACGACCGGCGCGGATATCGTCGTGGT 213548 29 96.6 32 ............................C ATTGATATCTAACATTACTACTCGCCCATACC 213487 29 100.0 32 ............................. TCTGCCCAAGCTGTAGCCGCAAACGCAAGTAG 213426 29 100.0 32 ............................. CTGGCCCAGGAGATGGCGTCGACGCTGCATGA 213365 29 96.6 32 ............................C AGGCTCTATCAACTGATAAGGGCGTTGGGGTA 213304 29 96.6 32 ............................G CAGTATCCGCAGCCGATGAGGCTGTGAAGAAG 213243 29 96.6 32 ............................C TGTGTCGCTTTTACGGCATACTTTGATCCCCT 213182 29 100.0 32 ............................. CACCGACCTTATACAAGAGGCTATCAAAATGT 213121 29 100.0 32 ............................. GGGTGAAGAACCAGACGTGACCGAGCCACAGA 213060 29 96.6 32 ............................C CAGGTGTTGCTGAGCATGCGCGTGGATTATAA 212999 29 100.0 33 ............................. TTGAACGTGTAATAAGTCATAGGGTCACACTCC 212937 29 100.0 32 ............................. TCTACGGGTTGTTCGAGACCGTCTATCGTCAT 212876 29 100.0 32 ............................. CGGCAACCCTGGACTGATCGTTGTTGACCGCA 212815 29 96.6 32 ............................C TCACAGCCTACCGGATCCTTGCCCTGCAGCAA 212754 29 100.0 32 ............................. TCGCGCGTCAGTTCTCACAGCCGGTTCTGGAC 212693 29 100.0 32 ............................. TTGTCATCTGGTATGCCTCTCCTTTTGCCGCT 212632 29 100.0 32 ............................. GAACTTTTTCCCCCTGAATTGGTCCAGGATGA 212571 29 96.6 32 ............................C TACCGACTTAGGAATCATGTCATCGACAGACT 212510 29 96.6 32 ............................G TGACGGTGAGCGTCTCACCCTGAGATCGCCTA 212449 29 100.0 32 ............................. CGGACGTAAGAAATTCGATATAGCCGTCCATA 212388 29 100.0 32 ............................. ATGCATGATGATAACTCCCTTGGTTAGTATCT 212327 29 100.0 32 ............................. TGCACCCTTGTCAGTGATGATGAAAAACCTGC 212266 29 96.6 32 ............................C AAGCAGGAGGTACAAAATGGCTAAGTATTACA 212205 29 96.6 33 ............................C TGCGTGGCTTTGGGGGGGATTGCAGTTGCCTAC 212143 29 100.0 32 ............................. GCCATCGGTACATGCACCTTGAAAGTGCAGTA 212082 29 96.6 32 ............................C CAGATACTTACGACCCTCAAGTACGATCCAAT 212021 29 96.6 32 ............................C TGAGTAGCTCCCTCGCTTCTGGGAGTGTATCC 211960 29 96.6 32 ............................C CTGAAACCGAGGGGCGCAGGCCTGACGGAGCT 211899 29 96.6 32 ............................C CCATTGAAAGGCATACGGCAATGGCCGAAAAC 211838 29 96.6 32 ............................C CAGGTTCAAAACCGTTTCAAGTGGACGCATGA 211777 29 100.0 32 ............................. ACTCTCCAATGTGAACGGTGCAGAACCGCCAT 211716 29 96.6 32 ............................G TTTTGCTCCTGTAGGCCCTACCGGGTAAATGG 211655 29 100.0 32 ............................. TATCCAAATTAACGTCGAATGCGCGATCTATG 211594 29 100.0 32 ............................. GGCGTGCAAGGCAACAACACGCCCAAGATCGA 211533 29 100.0 32 ............................. GTCTGATATCGTCAAAAACCCTATGCCATTTA 211472 29 96.6 32 ............................C CCTTTACATCTTAAAAGGAGTGATTATGGACA 211411 29 96.6 32 ............................C CAGTCCAACGGCAACACCATGGACTCGTACAC 211350 29 100.0 32 ............................. GGTGTACAGATTCAAATTCGCGGAATTCGGAA 211289 29 96.6 32 ............................C TGCCATGCTTGGCTATAGTCGAGGTCATATCC 211228 29 100.0 32 ............................. GCTCAAGGGTGGTACGGATTCCCGCCTGAGTG 211167 29 100.0 32 ............................. TCTTTGGCTTGGGTTTTCTCGCTCTCCGAAAA 211106 29 96.6 32 ............................C TCGCGTCGTCGCCTATGACCCCGGATGACGAC 211045 29 100.0 32 ............................. GTCACCGTGAAAAACACATCCTCATAATGCAC 210984 29 100.0 32 ............................. GACCCTCTCAAACAGGGGGAGATTCTGGCCGA 210923 29 96.6 32 ............................C CGAGAGTCCGGGCTTTAGCAATCCGGAGGAAA 210862 29 100.0 32 ............................. TTGACGCAAGGTCAGGCCGTAGAAGTCGGCTG 210801 29 100.0 32 ............................. TCCACTGACAAATCGACTCACGGCATTCCATA 210740 29 96.6 32 ............................C CATTGCCTGTTAGTTACTGTGCCATCTGCTGG 210679 29 96.6 32 ............................C AAACGCCAGACAGGCCACAATCAACGACCCGA 210618 29 96.6 32 ............................C AGGACCAGGATGAGGAGACAGCGGCAGGCATC 210557 29 96.6 32 ............................C TTGCCTTTTACGCGCTTGTCCAGAAGACCATG 210496 29 96.6 32 ............................C GGCGGCATGCCGCTGATATTCTTCTATGATAA 210435 29 96.6 32 ............................G GTCTCGAAAAGTTCGGTCTGCCCTGTGTGTGG 210374 29 96.6 32 ............................G GCGTGTGGGCCATCTTCATGCGGGTTTCGACA 210313 29 96.6 32 ............................A CGTCCCCTGAAGCTCTGAACCCTGAGAAACTC 210252 29 100.0 32 ............................. CTTTGAGCAGGTGTTTGAGCTAGCCAATCTGC 210191 29 96.6 32 ............................C AACACGTATGTTCCGAATTCCATCAACAAACT 210130 29 100.0 32 ............................. TCGGCCGCCACGACCGCCACCAATGCCAAGAC 210069 29 100.0 32 ............................. AGTCAGTCGTATTCTCGCTCTCATTTTGACTG 210008 29 96.6 32 ............................C GTGGAGCAGATTCAACGGGAAGTCGCTCCGCA 209947 29 93.1 32 .......T....................G TTCGCTAGACACATTCGGATATAGGTCGTAGC 209886 29 100.0 32 ............................. GCACTTTGATGGTCGCATTGTCGCCCTTGGGA 209825 29 96.6 32 ............................C AGATGTACTCCGTCCAGGCATCAAGCTCAAGA 209764 29 96.6 32 ............................C GGTGTTGGACGGGTTGTCATTCGCATGGCTGA 209703 29 96.6 32 ............................G TCGCCCACCGGCATTAAACGCCCTTACGCGCG 209642 29 100.0 32 ............................. GTGACTGGCCCGATTGTGGCGCGCTGGGTACT 209581 29 96.6 32 ............................C GGGCTGCGGCCGCCGTACAGGATCTATCCGGG 209520 29 100.0 32 ............................. ATTCAGTCGCCACGTGACGGTTGGTCCGGCAG 209459 29 96.6 32 ............................C ATTCGGGCGTACATTTTTCCACAGCAAGCCAA 209398 29 100.0 32 ............................. AAACTATACCGTCTAGCATAAGTGACTGCCGA 209337 29 96.6 32 ............................C ATGTGTCGCCCCCGTCCAGGTGGGAAACGACC 209276 29 93.1 32 ..........................TT. CTGCCTGCTCATGACTGCTCCCTCTCGTGGGT 209215 29 100.0 32 ............................. TGCCGTAATGGTTGTCGAACAGACCCCAGAAA 209154 29 100.0 32 ............................. ACATTTACGCCAGGCCATGTCATAGGCCACCC 209093 29 89.7 32 ..........................TGG AAAGCCTATGCGAAAATGTACGCCAGCCAGCC 209032 29 89.7 32 ..........................TGG AAAGCCTATGCGAAAATGTACGCCAGCCAGCC 208971 29 96.6 32 ............................C AGATATGCACGCATCCAACTGTCAGCATCAGT 208910 29 96.6 32 ............................G TCGGTGACCGCAGCTACCATGTCGGTCGATCC 208849 29 100.0 32 ............................. AATTCGCAGTCTTTAATCAAACAAAAACAAAG 208788 29 96.6 32 ............................C TCAAAATCTACACTCTGATAAAAACCTAAATG 208727 29 96.6 32 ............................C GTCCATATCCTGTCCACTTGCAGATAATCGCA 208666 29 93.1 32 ...................A........C CGCTGCGCTACGATAAGGATGGCAACGTGGTG 208605 29 96.6 32 ............................C ATCATCGTATGGTCTCCCGCATACGGCAGGCA 208544 29 96.6 32 ............................G TGATAGCGCTTGGGTCGTGGCTTGGCTGGCTT 208483 29 100.0 32 ............................. CAGATACAAGCAAAGGTGCATGATGGAAGACA 208422 29 100.0 32 ............................. GGCATGTCGTCTTCTCCGTTCCACCTGAGATA 208361 29 96.6 32 ............................C GACCTGCGCAAGCAGACCGACCAGGTGTCCAA 208300 29 89.7 32 ..........................TGC TCAAGCAATGAGGCATACTTGTTCTCAAGGAT 208239 29 96.6 32 ......T...................... AGCGCCACGCCCACTATATGACGTGACGATAT 208178 29 93.1 32 .............G..............G GTCAGCCAGGTCATGGAGCAGGGCCGGCAGAA 208117 29 96.6 32 ............................C TGCGCATCACGTCGCCCAGGTCGACCATGGCC 208056 29 93.1 32 ...........G......T.......... GGATTCTGCGTGAGTATCTGGCACCCAGGTCA 207995 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 114 29 97.7 32 GTGCTCCCCGCATCCGCGGGGATGATCCT # Left flank : GGGCCACGTCACCGCTAGGGTCCGGGATCGACTTTGGGAACGCATCACAGGGCAAATCCGAACTGGCAAGGCCATTATGGTCTATTCCGCCCGCAATGAGCAGCATCTGGGTTTCAAGGTGCATCGCTCGGATTGGAACCCAGTTGACTGTGAAGGATTGGCTCTTATGGAGAAGCCTGCTGATGGCGGCGACGGCAGATCTGCAGGAGGCGGAAACCGATACCGTCGGACCGGTTGGAGCAATGCCAGCAAGTACAGGCGGGCGGCAAAGTTCAGACGTTCGCGTTCTGGCTGAATACAACTAGACCTGCACTTTTTCAGATGAGCTTCGCCGATGAGGCCAAGCACTGATTACTGGGTAAGTGCATGGCTAAAGAGCACAGTGTTGATGGTCTGAATTGCAGCGGCTGAGACGGGACATAGAGGGGGTCGAAATGCAAACTCATTAAAAATCAGAGATCTTGTCTATCATATTGTTGGGATTGCAAGGATCTTTAAGT # Right flank : GTGTACCAGGGTCTGGACTGCCAGCTATTCACCCCCCCCCCCCTCCCGCATTGGCAGGGATAATTCTGAGCCCTAGCGCTGATGGGAGATATAAGTACTTCTCGCATTTGAGACGATAGGCAATTCTTGATTGCTGTTGTGTTTCCATTGTGCCTCATTATTGGCATTTAGCACGCGTTCTGCTGGATGCCGCCTGTGCGCGATCAGCTTTGCGTTTGCAGTGGTTGCGGCTTTACGCCCGCACTACGAACGTGAAAAGACCAATGAGGACTTCCCAATGTTTATCAGGTGCAAGTGGGTTAGTTGGAGCTCATGTATTCAGATACTCCCTAAAGGGTTCAAGCTCGATAAACTCGGGGTCGTTGGCCATTTTCCTGACTTCGGGCGGGAAAAGCGGTACCAGCTCGGGGTGGCCATATGCGGCGTCAAGCACGCTCTCGATGGCTGCCAGCGGCTCGCCTGCTGTGAGGGCAACCTCCGCGTCGTCCTCCATCAATTGA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATCCGCGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //