Array 1 153-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHVV01000011.1 Sporosarcina sp. A4 NODE_11_length_116637_cov_75.428886, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 152 33 100.0 33 ................................. ATTGATTAAATGTAAATGTACATCTACATCAGA 86 33 100.0 35 ................................. CCCGAGAGCTTGCTCTCCGAGATTACTCAGCAGCG 18 18 54.5 0 ..................--------------- | ========== ====== ====== ====== ================================= =================================== ================== 3 33 84.8 34 GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT # Left flank : ACGCGAGCTGTCTTTACATCTTTTTTTTTCTTTATGTGAGTTTTATCGAATAAAACGTGAGAGGGAGCGTTGCCGAAGGAGTTATCATGTTCAAATACAGAAATGTTATTTCAATACACTGCCAGCAATACAACCTGTTTATAGTCAGAAAGTGGGAGGCAGGTCAAGCGTTATTAGTTTGACAGCTTTTATAATTAAGGCCACTGATTAAATTAATTTTACTTATTTACTTGCAAGTTAGTCTGCAATAAAAACGGTTTATATGATTAAGTGCTTTACTGTGAAAAGGCTAGTTTCATTTTAAAGATAATGTTTTCCATGCTACAATCGAAATTAGAAGGACAGGCGAACCCGAAGTGCACATGTAATCCCAGAGAGGTTCGCGCATATTTGTCGGCATCTGAGCTTGAAATTGAGTAAAAGAGCATTGTTAAGTTGGATGTTTTACTTTTTGAACTCAATATGTTGTATGGGTGCTTTATAGAATACATCATATTGCG # Right flank : G # Questionable array : NO Score: 7.60 # Score Detail : 1:0, 2:3, 3:3, 4:0.24, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.90,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 481032-479780 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHVV01000001.1 Sporosarcina sp. A4 NODE_1_length_481090_cov_76.267668, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 481031 33 100.0 34 ................................. AATATCAATAGTTATGTTACTATTTACGATTGTT 480964 33 100.0 35 ................................. TCGAAATCGCGGTCAACAAGGTTATCGAGCATGAG 480896 33 100.0 36 ................................. TTTTATAAACTTGGTTAAACAAGATTGGCCAGTTAC 480827 33 100.0 35 ................................. AATATGGCGACAGGCGTTTCACGGGGCGCTGCAAG 480759 33 100.0 35 ................................. GGCATATCGCCGATGTCTGCGTCTTTGTCCCACTG 480691 33 100.0 36 ................................. GATGTGCGCCGCTACTGCGTCGATAATGTCCGCTGC 480622 33 97.0 37 ..........................A...... AGACGATACTGCGCCATGCCGGCGTGGAAGAAGGTGA 480552 33 100.0 34 ................................. CCTGCTGCTCTAATGAAAGAGCTACATGCCTATT 480485 33 100.0 37 ................................. CATACCCTTAACAGATACAACGTGTCTGAGGCCGATT 480415 33 100.0 34 ................................. CAGGAACTTACGGACAGTTTGTGCTGCTACTTTC 480348 33 100.0 34 ................................. AATGTAATCTCTCCTTTAAATTTAGTTTAGGCTA 480281 33 100.0 35 ................................. TGGTGAACGTTCGCTTGGGAATCGATCGTTTTATC 480213 33 100.0 33 ................................. TTACCGACTCTAACAATATTTTTGCTGATACGA 480147 33 100.0 34 ................................. TCCTGAAGTAGAGCAATGGAGAGCGCTAGTTGAA 480080 33 100.0 36 ................................. TCCCCAGATCCGCATATAACTGATCGCCCTTTCTTC 480011 33 100.0 34 ................................. AAAAAAAAGTGGAGAGACTTGTTACCTGAATATA 479944 33 100.0 34 ................................. ATAATAACTCAAGAGTTCACGACTGATAGACCTA 479877 33 100.0 34 ................................. ATTTTCGGAATTACAAATACCCATTCACGATTCG 479810 31 90.9 0 ..................--....A........ | ========== ====== ====== ====== ================================= ===================================== ================== 19 33 99.4 35 GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT # Left flank : TGTATAGAGAGTGTGGATTGAAATCCCGAGAGCTTGCTCTCCGAGATTACTCAGCAGC # Right flank : CACGCACAGATGGGACAGAAACGATTTTTATATGTAGTCTCTCTATGCAGAGAGTGCGGGGCGATATAATTTATCTATATACTCAATATGCAAGAAAGCATCCAGTCTTAGACAAAGAAAGAAGAATTCTGCTATTAGGTGATTAACTATTGAGGAGTTTTACTACTAATCAATAGGTTGGTTTCTTTGAGTGGTTTTTAAGTCGTAGTGTAAAAGAACGTTTTACTGCTGCGGAAATAAAAAAATCTATCAAACCAAAAGAATTAGTTAAGATAAATAACTGGGATTAGGCTACGAAAAGCATTCCACTACGGCGAAATGCTTTTTAGCTCATATGGAAACTGCAAAATGGGGATTCGCCGAAAAAGAGAAGAAATTAATGTACGTGCTTTAGAAGTGCTTCATGCTCGATAGAACGTGAAGAGAGGACTGTGATGATTGCGTGCTGGCTGGTTTGTTTTTCTGACAGGTCTTTGACGTATTCATTTGTTTCTAAAACA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.90,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //