Array 1 1-228 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821606.1 Neisseria sp. HMSC056A03 Scaffold142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1 27 81.8 34 ------........................... GGATTCGGAATAAGCTCCCCTGCTCCTGTCGGCA 62 33 100.0 35 ................................. CGTCAACAATGTTGTCTAGACGACAACAGGAAAGA 130 33 90.9 33 G............................G..A CGTCGGTTGAGGCCATTTGTGTCTCGATGGCGA 196 33 81.8 0 G...........................NNNNN | ========== ====== ====== ====== ================================= =================================== ================== 4 33 88.6 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : | # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCGGGCGGCTGTGTGTTGAAACAAAACCCTAACAGTTTTGACATCAACAAAAACAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCACGGTTAAAGAGGTCAATCTCACGTTTGATCACAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCAGTCCCCCCGTGTTACTAGCGGGGGGATGTTCCAGCCGCCTTCGGGCGGCTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCGGGCGGCTGTGTGTTGAAACATAGTAAAACCCTCTCATTAAAAAACATCAACCCCAGCCGCCTTCGGGCGGCTGTGTGTTGA # Questionable array : NO Score: 3.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.43, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 381-547 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821606.1 Neisseria sp. HMSC056A03 Scaffold142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 381 33 100.0 35 ................................. CACGGTTAAAGAGGTCAATCTCACGTTTGATCACA 449 33 100.0 33 ................................. GTCAGTCCCCCCGTGTTACTAGCGGGGGGATGT 515 33 78.8 0 T..........................NNNNNN | ========== ====== ====== ====== ================================= =================================== ================== 3 33 92.9 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CGCCTTCGGGCGGCTGTGTGTTGAAACGGATTCGGAATAAGCTCCCCTGCTCCTGTCGGCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTCAACAATGTTGTCTAGACGACAACAGGAAAGAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGGAAACGTCGGTTGAGGCCATTTGTGTCTCGATGGCGAGCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCGGGCGGCTGTGTGTTGAAACAAAACCCTAACAGTTTTGACATCAACAAAAACAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCGGGCGGCTGTGTGTTGAAACATAGTAAAACCCTCTCATTAAAAAACATCAACCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATAATATGCGCTAAACCCATCGCTCCTTTTGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATGAAAGATGCTGGCTGATGGGCGATGAAGATCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCGGGCGGCTGTGTGTTGAAACTTTTTGTGTCAGCATAAAGTCATTAGCATTAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 698-1501 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821606.1 Neisseria sp. HMSC056A03 Scaffold142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================================================================== ================== 698 33 100.0 33 ................................. CATAATATGCGCTAAACCCATCGCTCCTTTTGT 764 33 97.0 32 T................................ TATGAAAGATGCTGGCTGATGGGCGATGAAGA 829 33 81.8 87 T...........................NNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 949 33 75.8 32 NNNNNNNN......................... TTTTTGTGTCAGCATAAAGTCATTAGCATTAA 1014 33 100.0 33 ................................. TTTTTCATTTTGATTCTGTTTATTTTGACTGTT 1080 33 100.0 35 ................................. CGCAAGCGCGGAACGCGCTCTTCCTTGTCTAAATA 1148 33 84.8 88 ............................NNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 1269 33 78.8 35 NNNNNNN.......................... TATGTCTCCTTTTACGGCTTGATAGGCTTCATATG 1337 33 100.0 34 ................................. GCCCCTACATAAGTTACAAACGACAAACCAAACG 1404 33 100.0 32 ................................. TGTTGATTGATACCCAAAGCAAATAATGTAAA 1469 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= ======================================================================================== ================== 11 33 92.3 44 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCGGGCGGCTGTGTGTTGAAACAAAACCCTAACAGTTTTGACATCAACAAAAACAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCACGGTTAAAGAGGTCAATCTCACGTTTGATCACAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCAGTCCCCCCGTGTTACTAGCGGGGGGATGTTCCAGCCGCCTTCGGGCGGCTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCGGGCGGCTGTGTGTTGAAACATAGTAAAACCCTCTCATTAAAAAACATCAAC # Right flank : CCGGCTTTGGGCACGGAATATAAAATCAGTCTTGACCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCGGCTGATTTGTATAGGCCGTACACGCTTTTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGACGATCGTATTAATTGGAGTAGTGCTTTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATGACTTCGAAGAAGCTGTTAACGCAGGCTTGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAACGGACGAAGCATAAACCAGTTTCAGGGGTTCGGCGCCAGCCGCCTTCGGGCGGCTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-0.87, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : CCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1724-1887 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821606.1 Neisseria sp. HMSC056A03 Scaffold142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 1724 33 100.0 32 ................................. CGACGATCGTATTAATTGGAGTAGTGCTTTTT 1789 33 97.0 33 C................................ TATGACTTCGAAGAAGCTGTTAACGCAGGCTTG 1855 33 93.9 0 G...............................A | ========== ====== ====== ====== ================================= ================================= ================== 3 33 97.0 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTCGGGCGGCTGTGTGTTGAAACTATGTCTCCTTTTACGGCTTGATAGGCTTCATATGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCCCCTACATAAGTTACAAACGACAAACCAAACGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTTGATTGATACCCAAAGCAAATAATGTAAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGGCTTTGGGCACGGAATATAAAATCAGTCTTGACCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCGGCTGATTTGTATAGGCCGTACACGCTTTT # Right flank : ACGGACGAAGCATAAACCAGTTTCAGGGGTTCGGCGCCAGCCGCCTTCGGGCGGCTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACAACCAATAAAACCACCAAAAAAGGCCAAATGCCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTGCCTATGCTTTGCATTATACCGCCTTATTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAACTCTTGCAATGCCTTGATGTAGTCGTAATAAACGCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTCGGGCGGCTGTG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2109-2273 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821606.1 Neisseria sp. HMSC056A03 Scaffold142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 2109 33 93.9 33 C...............................C CGTGCCTATGCTTTGCATTATACCGCCTTATTT 2175 33 100.0 33 ................................. CTCTTGCAATGCCTTGATGTAGTCGTAATAAAC 2241 33 87.9 0 .............................NNNN | ========== ====== ====== ====== ================================= ================================= ================== 3 33 93.9 34 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCGGCTGATTTGTATAGGCCGTACACGCTTTTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGACGATCGTATTAATTGGAGTAGTGCTTTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATGACTTCGAAGAAGCTGTTAACGCAGGCTTGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAACGGACGAAGCATAAACCAGTTTCAGGGGTTCGGCGCCAGCCGCCTTCGGGCGGCTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACAACCAATAAAACCACCAAAAAAGGCCAAATGCC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTCGGGCGGCTGTGTGTTGAAACAGGGGCGTTTATTTACCGTTTATTTACCGTTTAAGCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCACGAAGTTCCACTTACGCTTACCGTTTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAACCATTTGCCTCCAACTTAGGCACAATTTTTTTGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAACCGATACACACCCTTTTGCGCTATTACAACACATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGAGTATCTGATTACGGCCTTGCACAACGCTGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGGAACTGGTGGTGGTGGTGGAAGCTCAGGCCCAGCCGCCTTCGG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 2432-2790 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821606.1 Neisseria sp. HMSC056A03 Scaffold142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 2432 33 100.0 32 ................................. CATCACGAAGTTCCACTTACGCTTACCGTTTT 2497 33 93.9 33 G...............................A CCATTTGCCTCCAACTTAGGCACAATTTTTTTG 2563 33 93.9 33 G...............................A CCGATACACACCCTTTTGCGCTATTACAACACA 2629 33 97.0 33 T................................ CGAGTATCTGATTACGGCCTTGCACAACGCTGG 2695 33 100.0 30 ................................. CGGAACTGGTGGTGGTGGTGGAAGCTCAGG 2758 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 6 33 97.5 32 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTCGGGCGGCTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACAACCAATAAAACCACCAAAAAAGGCCAAATGCCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTGCCTATGCTTTGCATTATACCGCCTTATTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAACTCTTGCAATGCCTTGATGTAGTCGTAATAAACGCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTCGGGCGGCTGTGTGTTGAAACAGGGGCGTTTATTTACCGTTTATTTACCGTTTAAGC # Right flank : CTAAAACGCCTGAGCTTGTAGAGTGGCTCCATGTCCCAGCCGCCTTCGGGCGGCTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACCACAATGCGGATTTCGCGGGTAAATTCGAGGCCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAACCATTTAAATCAATTACCTGAACCAACCACCCCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAACCGGCAGCCTGAATCGACAATAGCGGCAAGATTAACCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTCGGGCGGCTGTGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 3011-3176 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821606.1 Neisseria sp. HMSC056A03 Scaffold142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 3011 33 100.0 33 ................................. CCATTTAAATCAATTACCTGAACCAACCACCCC 3077 33 100.0 34 ................................. CCGGCAGCCTGAATCGACAATAGCGGCAAGATTA 3144 33 81.8 0 A...........................NNNNN | ========== ====== ====== ====== ================================= ================================== ================== 3 33 93.9 34 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAA # Left flank : GGCGGCTGTGTGTTGAAAACCATTTGCCTCCAACTTAGGCACAATTTTTTTGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAACCGATACACACCCTTTTGCGCTATTACAACACATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGAGTATCTGATTACGGCCTTGCACAACGCTGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGGAACTGGTGGTGGTGGTGGAAGCTCAGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAAAACGCCTGAGCTTGTAGAGTGGCTCCATGTCCCAGCCGCCTTCGGGCGGCTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACCACAATGCGGATTTCGCGGGTAAATTCGAGGCC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTCGGGCGGCTGTGTGTTGAAACATAAAACGCCTTTGGGTGTGCGTATGCGCTATTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTAGTCTTGGCGGCAAAAGTCCTCAAAATTTGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAATCCCATAGGTTGATTGTTTTGATTGTTTGGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTAGGTATGGCTTTGCTGTCCGTTTATGTTGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGGGAAGAGCCGCGATAATTGGGACGGCGGCAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTATGGGTTGGTCTGATGTTTGGTCGCGGTCGGCCCAGCCGCCTTCGGG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 3332-3629 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821606.1 Neisseria sp. HMSC056A03 Scaffold142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 3332 35 100.0 31 ................................... GTCTTGGCGGCAAAAGTCCTCAAAATTTGAT 3398 35 97.1 31 .................................A. TCCCATAGGTTGATTGTTTTGATTGTTTGGT 3464 35 94.3 30 .................................GT AGGTATGGCTTTGCTGTCCGTTTATGTTGT 3529 35 91.4 31 ................................CGG GAAGAGCCGCGATAATTGGGACGGCGGCAGC 3595 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================== ================== 5 35 96.6 31 CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTA # Left flank : CCTTCGGGCGGCTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACCACAATGCGGATTTCGCGGGTAAATTCGAGGCCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAACCATTTAAATCAATTACCTGAACCAACCACCCCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAACCGGCAGCCTGAATCGACAATAGCGGCAAGATTAACCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTCGGGCGGCTGTGTGTTGAAACATAAAACGCCTTTGGGTGTGCGTATGCGCTATTC # Right flank : ATGGGTTGGTCTGATGTTTGGTCGCGGTCGGCCCAGCCGCCTTCGGGCGGCTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACGGTGGCGGTATCGCCTGATTTGTTGACGATGTGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATCCAGTATCTCCGGAAAGCCATGCAGAATAATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTACCGCTACCGCCAAAACGCCTTGTCGGTAACCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 3847-4010 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821606.1 Neisseria sp. HMSC056A03 Scaffold142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 3847 33 97.0 33 C................................ TATCCAGTATCTCCGGAAAGCCATGCAGAATAA 3913 33 100.0 32 ................................. CGTACCGCTACCGCCAAAACGCCTTGTCGGTA 3978 33 81.8 0 A...........................NNNNN | ========== ====== ====== ====== ================================= ================================= ================== 3 33 92.9 33 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CGGCTGTGTGTTGAAACTTAGTCTTGGCGGCAAAAGTCCTCAAAATTTGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAATCCCATAGGTTGATTGTTTTGATTGTTTGGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTAGGTATGGCTTTGCTGTCCGTTTATGTTGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGGGAAGAGCCGCGATAATTGGGACGGCGGCAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTATGGGTTGGTCTGATGTTTGGTCGCGGTCGGCCCAGCCGCCTTCGGGCGGCTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACGGTGGCGGTATCGCCTGATTTGTTGACGATGTG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACACAAAGAGGCAGAATTGGTTATGTCTGACCTTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGAAGTCACTTGAGGAATTTTAATGTCATCGAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCTTATAAATCATGGTATTACTCAATGCGCCCGCCCAGCCGCCTTCGGGCGGCTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACAAATATTCTGAGGTAAGATCAGCAAGCCTCTTCCCAGCCGCCTTCGGGCGGCTGTGT # Questionable array : NO Score: 3.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 10 4167-4332 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821606.1 Neisseria sp. HMSC056A03 Scaffold142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================ ================== 4167 34 97.1 32 .................................C GAAGTCACTTGAGGAATTTTAATGTCATCGAA 4233 34 100.0 32 .................................. CTTATAAATCATGGTATTACTCAATGCGCCCG 4299 34 79.4 0 ...........................NNNNNNN | ========== ====== ====== ====== ================================== ================================ ================== 3 34 92.2 32 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACT # Left flank : GCCTTCGGGCGGCTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACGGTGGCGGTATCGCCTGATTTGTTGACGATGTGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATCCAGTATCTCCGGAAAGCCATGCAGAATAATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTACCGCTACCGCCAAAACGCCTTGTCGGTAACCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACACAAAGAGGCAGAATTGGTTATGTCTGACCTTGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACAAATATTCTGAGGTAAGATCAGCAAGCCTCTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCGTTACGACTTGGTCGCGCTTTAAATGCTGGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGGAATTTGTAGGCCGTCTGAAAAATAAAGGGAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGGAAACTGTAGTCGCTACCGCTTTTAACTAAACAATCACCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAACCGAACAATAAAGGAGGATTTGAACAATTAATAAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 4.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 11 4485-4719 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821606.1 Neisseria sp. HMSC056A03 Scaffold142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 4485 33 93.9 34 C...............................C CAGCGTTACGACTTGGTCGCGCTTTAAATGCTGG 4552 33 93.9 34 T...............................C CGGAATTTGTAGGCCGTCTGAAAAATAAAGGGAA 4619 33 97.0 35 .............................G... CTGTAGTCGCTACCGCTTTTAACTAAACAATCACC 4687 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 4 33 96.2 35 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAA # Left flank : GCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACACAAAGAGGCAGAATTGGTTATGTCTGACCTTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGAAGTCACTTGAGGAATTTTAATGTCATCGAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCTTATAAATCATGGTATTACTCAATGCGCCCGCCCAGCCGCCTTCGGGCGGCTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACAAATATTCTGAGGTAAGATCAGCAAGCCTCTT # Right flank : ACCGAACAATAAAGGAGGATTTGAACAATTAATAAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTCGGGCGGCTGTGTGTTGAAACAGGAGCGCAGCGCAATTTGTAGCCTATATAGGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAACCTCTTGTCTAATTTTATGCGAACTGGACACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGCTTCTAAACAATATGGGCAACTGTTAGCGAATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAACGCCAGTCTCTCTGTTGTATCCCATCTGCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 12 4942-5107 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821606.1 Neisseria sp. HMSC056A03 Scaffold142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 4942 33 97.0 33 T................................ CAAACCTCTTGTCTAATTTTATGCGAACTGGAC 5008 33 100.0 34 ................................. CGCTTCTAAACAATATGGGCAACTGTTAGCGAAT 5075 33 97.0 0 C................................ | ========== ====== ====== ====== ================================= ================================== ================== 3 33 98.0 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTGTTGAAACAAATATTCTGAGGTAAGATCAGCAAGCCTCTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCGTTACGACTTGGTCGCGCTTTAAATGCTGGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGGAATTTGTAGGCCGTCTGAAAAATAAAGGGAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGGAAACTGTAGTCGCTACCGCTTTTAACTAAACAATCACCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAACCGAACAATAAAGGAGGATTTGAACAATTAATAAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTCGGGCGGCTGTGTGTTGAAACAGGAGCGCAGCGCAATTTGTAGCCTATATAGGA # Right flank : CCAAACGCCAGTCTCTCTGTTGTATCCCATCTGCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGGGCGGCTGTGTGTTGAAACAGAACAACGCCACCGCCTGCGATATAAAAAATTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGCAAAAGATTTAAGCGGAAACAAAAAGGCGACCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATTCATTGCCGGGTCATCTCGCTGGCAGTTGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTTTGGTGGAATGCAGACGTAAAGAAAGCCTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGGATATACACGAAGAGCAAAAAGCAATTGATGATCAGCCGCCTTCGGGC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 13 5326-5622 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821606.1 Neisseria sp. HMSC056A03 Scaffold142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 5326 33 100.0 33 ................................. GGCAAAAGATTTAAGCGGAAACAAAAAGGCGAC 5392 33 97.0 33 C................................ CATTCATTGCCGGGTCATCTCGCTGGCAGTTGT 5458 33 100.0 33 ................................. TTTTTTGGTGGAATGCAGACGTAAAGAAAGCCT 5524 33 97.0 33 A................................ CGGATATACACGAAGAGCAAAAAGCAATTGATG 5590 33 90.9 0 AT..............................N | ========== ====== ====== ====== ================================= ================================= ================== 5 33 97.0 33 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTCGGGCGGCTGTGTGTTGAAACAGGAGCGCAGCGCAATTTGTAGCCTATATAGGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAACCTCTTGTCTAATTTTATGCGAACTGGACACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGCTTCTAAACAATATGGGCAACTGTTAGCGAATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAACGCCAGTCTCTCTGTTGTATCCCATCTGCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGGGCGGCTGTGTGTTGAAACAGAACAACGCCACCGCCTGCGATATAAAAAATT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTCGGGCGGCTGTGTGTTGAAACAGGGTAAACCAACCCTGCGGGCGGTGGGTAAACTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAATACAACCAATAGTATTGAATACGATGGTCGATCAGCCGCCTTCAGGCGGCTATGTGTTGAAACGCCTTCTGGAATAGGTAGGTTAGGAATAATTTTCCAGCCGCCTTCAGGCGGCTGTGTGCTGAAACTCTAGTAACTACGAACTCTATGACGACCTATTCCGTCAGCCGCCTTTGGGTGGCTGTATGTTCAAATATCGTCCAAGCAGGCTACTCTTCTTGGTGCGCAGGAAATTGCCTGCCAGACGGGAAAGTTGCATGATTTAGGGAAATATTCAGAAGCCTTTAACCGTCAATTACACGGC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 285-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821632.1 Neisseria sp. HMSC056A03 Scaffold345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 284 28 77.8 30 --------............................ CCGATTTTTCCTTAAATGTAAAGCTCAGAT 226 36 100.0 30 .................................... CATAACGCGCCTTTAAATCTGGGTCATTCC 160 36 100.0 30 .................................... TATCGGGTGTATTAGGTGTGCTTGGGTTGT 94 36 100.0 30 .................................... GATGAGTAAACGAAAAAGGAGCAGGATACG 28 28 77.8 0 ............................-------- | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 91.1 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : | # Right flank : T # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 294-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821643.1 Neisseria sp. HMSC056A03 Scaffold412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 293 36 77.8 30 NNNNNNNN............................ TGTTGCCGGTAAACAGTGGCTGACCGCTGA 227 36 100.0 30 .................................... TGATTTGGTCGATGAGTTCAGATTGTGTTT 161 36 100.0 30 .................................... CATGTATGCAAATATGCACAAGACAAGTAT 95 36 100.0 30 .................................... AAGAATTTTTAGATCCAACACCCAACGTGT 29 29 80.6 0 .............................------- | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 91.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATATAGTAACTATTAGTTACACGCTTTTTAATGTTGTAGCTCCCTTTCTCATTTCGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTCTCATTTCGCAGTGCTACAATCCTTGCCATTAACAAAAGCAATTACTATGTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTACATGTCCAAAAATTGGCTTTTCATCGGTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGCGTGTCCGTATATCAGGCGGTCGCCGCCTGTTGTAGCTCCCTTTCTCATTTCGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : G # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 2 862-693 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821643.1 Neisseria sp. HMSC056A03 Scaffold412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 861 36 88.9 30 T...G..GC........................... TCGGCGATGCAGTACATATTAGGCCGGGCA T [855] 794 36 100.0 30 .................................... ATAGTAACTATTAGTTACACGCTTTTTAAT 728 36 75.0 0 ...........................NNNNNNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 88.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TGACATTAGGTTCCAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGTAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTAACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCAAATTAATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTCTCATTTCGCAGTGCTACAATCCTTGCCATTAACAAAAGCAATTACTATGTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTACATGTCCAAAAATTGGCTTTTCATCGGTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGCGTGTCCGTATATCAGGCGGTCGCCGCCTGTTGTAGCTCCCTTTCTCATTTCGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCTTTCTCATTTCGCAGTGCTACAATTGTTGCCGGTAAACAGTGGCTGACCGCTGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAA # Questionable array : NO Score: 4.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 228-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821652.1 Neisseria sp. HMSC056A03 Scaffold484, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 227 33 81.8 35 NNNNNN........................... ATCGAAGAGCAACAGTAACCGAAATCCCGTCAAGG 159 33 100.0 32 ................................. TGTATGGCAAGGTAAGTTGAGCGTAAAAGCGT 94 33 100.0 33 ................................. TAAAGCGAATGTTTGAGAACCAACAAACCAACC 28 28 81.8 0 A...........................----- | ========== ====== ====== ====== ================================= =================================== ================== 4 33 90.9 34 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TATTGTGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTCAGAAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTCGTTTGTACTTATAAGCACAAGCCAAAAGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGATAGGCCGTCTGAAGCTGTTTCAGCAGGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTCGTTTGTACTTATAAGCACAAGCCAAAAGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGTGGCCGTTTCTGTATGGCAAGGTAAGTTGAGCCAGCCGCCTTCGGGCGGCTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : T # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 611-381 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821652.1 Neisseria sp. HMSC056A03 Scaffold484, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 610 33 100.0 33 ................................. TGTCGTTTGTACTTATAAGCACAAGCCAAAAGA 544 33 100.0 32 ................................. CAGATAGGCCGTCTGAAGCTGTTTCAGCAGGT 479 33 100.0 33 ................................. TGTCGTTTGTACTTATAAGCACAAGCCAAAAGA 413 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 4 33 100.0 33 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATAGGGATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGGCTGCGGCGCGTAGCGAAATTGTGTCTTGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGATCAGTGGGTTGTTTTAAAAGATAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGACGGAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCTAACCTGCGGTTCTCATGAAAATGCGGCAGGTTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGTGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTCAGAAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : CCTGTGGCCGTTTCTGTATGGCAAGGTAAGTTGAGCCAGCCGCCTTCGGGCGGCTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACATCGAAGAGCAACAGTAACCGAAATCCCGTCAAGGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTATGGCAAGGTAAGTTGAGCGTAAAAGCGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAAAGCGAATGTTTGAGAACCAACAAACCAACCACCAGCCGCCTTCGGGCGGCTGTGTGTT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24892-24724 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821666.1 Neisseria sp. HMSC056A03 Scaffold696, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24891 36 75.0 30 NNNNNNNNN........................... TTCCAACCATGACACCTGAGCCAGCAGGGA 24825 36 100.0 30 .................................... ACGATCAATCGAAATCTGAATACGCTTTTC 24759 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 91.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CCTTTCTCATTTCGCAGTGCTACAATCAGGCAGGCCGTAACAGGCGGTATCGTATTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCAGGAGAGACACCACAAGGAGGATTTAGAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCTTATCCGCTTCAACAATTGGCTGGAAGTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGAACATCGATAATCACGTTTTGGGCACGATGTTGTAGCTCCCTTTCTCATTTCGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ACCTTAATGGGAAACCCTTATTCTATAAGGGTTTCCCATTTTATTTGGTCTGAAAAATAGGACTTAAAATAATAATAGTTGGTCGGAATTTACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGCAGTTTCATGGTGGTATATTGCTTTTCTGTTACTTCCAAACAGCGGATTGACCCTTCTTGCGGTAGGTTTGCACATAGCCTATTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCTGTGGTAACCGGTAGGTCGAAGAAGACAATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAGTTTCAGCTGTTTGGCGTTTTTGTCGGTTATGCTGGCTTGAAATGAAGAAATTATTTTATCGATGGCAGCTAAGGTG # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 2 25209-24975 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821666.1 Neisseria sp. HMSC056A03 Scaffold696, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25208 36 100.0 30 .................................... CAGGAGAGACACCACAAGGAGGATTTAGAA 25142 36 100.0 30 .................................... CCTTATCCGCTTCAACAATTGGCTGGAAGT 25076 36 100.0 30 .................................... GAACATCGATAATCACGTTTTGGGCACGAT 25010 36 77.8 0 ............................NNNNNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 94.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CCTTTCTCATTTCGCAGTGCTACAATCAGGCAGGCCGTAACAGGCGGTATCGTAT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTTCTCATTTCGCAGTGCTACAATTTCCAACCATGACACCTGAGCCAGCAGGGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATACGATCAATCGAAATCTGAATACGCTTTTCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATACCTTAATGGGAAACCCTTATTCTATAAGGGTTTCCCATTTTATTTGGTCTGAAAAATAGGACTTAAAATAATAATAGTTGGTCGGAATTTACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGCAGTTTCATGGTGGTATATTGCTTTTCTGTTACTTCCAAACAGCGGATTGACCCTTCTTGCGGTAGGTTTGCACATAGCCTATTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //