Array 1 397709-398394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTYG01000005.1 Pseudomonas aeruginosa strain AZPAE14443 AZPAE14443_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 397709 28 100.0 32 ............................ TGAGTGGCTTGCCGAGGTCGACAGCAAAGAGT 397769 28 100.0 32 ............................ AACAGCAAGACGCTCAAGGCGCTGACTGGCTC 397829 28 100.0 32 ............................ GAGGGAGTGCCGGCATCGGTGCTTGAGGCTAC 397889 28 100.0 32 ............................ AGGAGCCAACAGCGAGGTGCCACCCACCAGGA 397949 28 100.0 32 ............................ AGCACGAAAATCCCGCCAGCGGGTGTCGCACT 398009 28 100.0 32 ............................ AGTTCGGCGGCTGTACTGCGGACGTCCCGGCT 398069 28 100.0 32 ............................ AGAACGAAAACTGCTAGCGGCGACGATACCCG 398129 28 100.0 32 ............................ GCCCACCAGCTCAGTCCAGGCGCTGCCGGAAT 398189 28 100.0 32 ............................ CAGCAGCGGCTCCAGGAAGAGGGGCGCTGCCT 398249 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 398308 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 398367 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTTGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 409036-407268 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTYG01000005.1 Pseudomonas aeruginosa strain AZPAE14443 AZPAE14443_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 409035 28 100.0 32 ............................ GCCCGCTGGGGAAGCCGCAGTTATCCGGATTA 408975 28 100.0 32 ............................ TTCCTGAAGTGCGTTTTGCCTTCGTTGGACAT 408915 28 100.0 32 ............................ ATCCCTGTAGTCTGGCAGCATGCTCTCCCCAT 408855 28 100.0 32 ............................ GGCAGGCCAGGTCAAGACATACGAGTATTCCG 408795 28 100.0 32 ............................ TCGTCGGCGGTGGACCGATGCAGGTCTAGCAG 408735 28 100.0 32 ............................ GCGAAGTCGGCACTCAACGTTCTGCCGTTTCT 408675 28 100.0 32 ............................ AACGTGTCCAGGACTTGCTGGTGGCGATGGGG 408615 28 100.0 32 ............................ TAGCCTGAGTTTTCATCTCTTGTGGTAGTGCA 408555 28 100.0 32 ............................ CGGCCGGGCTACCGTCCAGGGCAGGCGAAAGG 408495 28 100.0 32 ............................ AACGGGTTGCAAGGCTAACTGTACGTATTTGG 408435 28 100.0 32 ............................ TTCCGGAAGAACCTGGCGTACTACCCGGAAGC 408375 28 100.0 32 ............................ AATGCTCGCTGTGATCGCCCGTAACGCCTACC 408315 28 100.0 32 ............................ CACTTCGTAGAAAAGGAACTGCGGCCAGGCGA 408255 28 100.0 32 ............................ AGCTACGCCGTTGAGGATAGAAGCCGGGGAAA 408195 28 100.0 32 ............................ AGTTCGGCCAGCAAGCGTCTAGCGACGTGCGT 408135 28 100.0 32 ............................ TTCGCCGGTGGCTGGTGCGCGACCAACTGGCC 408075 28 100.0 32 ............................ TGATGCCGGACATCGAGTGGCCGGCGAAAGGC 408015 28 100.0 32 ............................ TGGCGCATGACCTGACTCAGCAGGTCCGGCGA 407955 28 100.0 32 ............................ TTGTCCACTACGCCCAGGACGTACCCTTTCAG 407895 28 100.0 32 ............................ AGAAGGGCGGCCAGGGTGTGTTGGATCGTACT 407835 28 100.0 32 ............................ ACGTAGGTAAAGCAAAACAACAAGTGGTATGA 407775 28 100.0 32 ............................ TTGTCGGCGCCCTGGGCGTCAAGGCCGTGCTC 407715 28 100.0 32 ............................ GCTACGGGGTGGAGTTCTATACCGCCCTGGTG 407655 28 100.0 32 ............................ CGACAATGACCAGGCGGTGATCTGGCCCTGGC 407595 28 100.0 32 ............................ TCGGGAGGCCGGCACCGGATGCAGTTGCATTG 407535 28 100.0 32 ............................ ATGTTGACCGCAGGGTTCTCGACCAAGTATCC 407475 28 100.0 32 ............................ AGGCCGTTGGCCGCCGCGTATTCCGGCCAGTG 407415 28 100.0 32 ............................ TGGGTGTGCAGGTTGGCAAATGCCAGCACGCA 407355 28 100.0 32 ............................ TATCCGAGTTTCCCAGACCTACGAAATAGTCA 407295 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 30 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //