Array 1 214631-216650 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAC01000041.1 Moraxella catarrhalis strain 611_MCAT 200_277961_9490278_10+,...,133_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 214631 28 100.0 32 ............................ TACAGCGGTTTGTAGCGTACTTTTGGCGGTGC 214691 26 92.9 0 ..........................-- - Deletion [214715] 214717 28 100.0 32 ............................ GTGCAGCTTGGGGCAGTGAATCAGCAGAGGCA 214777 28 100.0 32 ............................ AAAGCCATCTTGACCAATCACTGCGTACGCCC 214837 28 100.0 33 ............................ ATGTAAAACCCAAAAACATAAACTCATTTCTAA 214898 28 100.0 32 ............................ TGTGGGCGATTATTAGCAAAAATTGGAAACTT 214958 28 100.0 32 ............................ AAAGCCTATAAGCCCAACGCCACCGTCATTTA 215018 28 100.0 32 ............................ TTTTGCCTGATGCGTGTTTTTTGCAATAAGCC 215078 28 100.0 33 ............................ GCGGTCGTGAAGGCCTGGACAGACTGGGTATCT 215139 28 96.4 32 ...............A............ TGCCACTGTGTACACAGCGTGGCAAGGGTATC 215199 28 100.0 32 ............................ ACCCCAAAATACATCTACACCGATGATAACAA 215259 28 100.0 32 ............................ ACGCTGTAAAGCGTTTAATGTTTTGAGCGTCA 215319 28 100.0 32 ............................ TAACAAATCATCAAGACCACCACCGTCTCCGC 215379 28 100.0 32 ............................ AAGAACTAAACGCCCAAGCATTTGACGAAAAA 215439 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATACCCTT 215499 28 100.0 33 ............................ AACATTCCATTCAAATTCAGCAGTGTAGACATT 215560 28 100.0 32 ............................ ACAGGCACTATGGGATTGACATTTGGTTTATT 215620 28 100.0 32 ............................ GTGGGCAAGTCTTTGCTGATAAAATCACAGGT 215680 28 100.0 32 ............................ TAAGAAAAAGCCCCTGTGTCAAACAGGGGTTT 215740 28 100.0 32 ............................ ATCTATCCATTTCCGCAATCCCAAACTGGGGA 215800 28 100.0 32 ............................ TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 215860 28 100.0 32 ............................ TACAAAATGACAGCTATCCCATCCGCTCATAC 215920 28 100.0 32 ............................ GCCGTGCCCCCATTGATGCCTTTTTTGTCTGT 215980 28 100.0 32 ............................ ATCTTTGTTTTTTGTGATGTTGCAAATCTCTG 216040 28 100.0 32 ............................ AAACGGTGGGGTCTCATACTTCATCAATCCGT 216100 28 100.0 32 ............................ GCACTTTCAATGCTTGGTATCTTGCTGTTAAC 216160 28 100.0 32 ............................ GTGGGCAAGTCTTTGCTGATAAAATCACAGGT 216220 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTGTCCAGGC 216280 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 216340 28 100.0 15 ............................ ATCGGATTAAAAGCT Deletion [216383] 216383 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 216443 28 100.0 32 ............................ ACATCATCGCCGACATTTTGCACGATGACAAG 216503 28 100.0 32 ............................ ATTACAAGGTTTTAAATAATCATTTAACGCTG 216563 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 216623 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.5 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //