Array 1 140159-139840 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKA01000012.1 Akkermansia muciniphila strain GP24 scaf-12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =============================================================== ================== 140158 31 100.0 34 ............................... TTACGGACCGTTATCTTTGTCTTGGGCCGTCTCT 140093 31 100.0 33 ............................... CAGGCCGCGCCGACCATGTGCAGGCGCGCCCGG 140029 31 100.0 34 ............................... TTCGTGTACCCGGCCAGCTGGGCCTGCTGGGCAT 139964 31 100.0 63 ............................... TGGACAATTTGAACCGGCAGTGGGAGTACTGGGGACCATGGATTTCTCCGGAAGTTTTTCCAG 139870 30 87.1 0 ............T.......C....-....T | A [139850] ========== ====== ====== ====== =============================== =============================================================== ================== 5 31 97.4 41 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GGGGGAAAGAGGGATTCCCGGTTATTCATCCATTGAGGGGAGCCGTCCGTAAGGGCGGCTCCTTTTTGATGTTGCAGGAAATGGCGCAGCGGGTGCTTTTCCTTATACGGGAAAAGGACGCCGGGACCTTCCGAGAGAAATGGTTTATGGGCGTGATTGTTGCCGGATTCACGATGCACGGCATCGTTTGAAGCTCCGGGGAAGATGTTGCTGGACGCGGCAGGGAGGAACGGCTAGCATGAATGAATCAAATTGGAAGCAAGCGGTACCGGACACGGAAAGACGGAATATCCGCCATCGGACCCTGTCTGATGCCGCCTTGCGCCAACCCAAAGCTCACAGGAAATTCCCGGGAGACCGGCGCTTGCTGTAAGTGATTGGGAAATGCATATTGACAAAAGAACCACCCATTATTGAACCTGGCAGCATCCGGAATCCGAATCAGGTTGGCGCAAATCCCCTTTTGCACGCTTGATACTCAACCCGTATGCTTCCAGGCC # Right flank : TGAAGGTGTATACTTGACGATACTGAATAGAGAATCCTCTCTGTTCTAAAAAATGGATTTAACTGGTTATTTGTTGATTGTTTCTATTTAAGGAGAAGCTTCTGTGGACCATATGGAGGTGTTTCCGTTAGCTTCATGATGAGGCGCGAACAGCCTGTTTTTAGAAAAGGAGAAGTTATTCGGAGAGTTTCCTGCGGCATGGGGCATTTTTCCGCGTTCACAGTTTGTGATGGATAAGGCGGGAGGAATCCAATATAGAGATAAAATGCACACAGACTGGTTGAATGATTTTCTGGAATGGGCGCCTATTCTGCTGATGATACTGGTAGCGGGTGTTTTTCTGGCTGCGCTGAAATGGAGAAGCGGGAGGCTGAAGAAGTCCATGGAGGAATGGAAGCGGAAGATGGTCCGGGAGGCGGAGGCAGGCCACCCCTCCGCCCAGTTCCAGCTGGGGCGCATTTACCAGAAGGGGGATGGCGTGGAGAAGGACCCGGCCCGGG # Questionable array : NO Score: 8.43 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:-0.49, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4835-4414 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKA01000010.1 Akkermansia muciniphila strain GP24 scaf-10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 4834 31 100.0 34 ............................... AGGTGACTTAATGCTTCAAATAATTTCTTGTTCA 4769 31 100.0 34 ............................... ATTGGTTTTTCGATTGTCAAAAACATGAATATTT 4704 31 100.0 34 ............................... CGAAGAAATGGGTGTCCCTGAACACGTCAAGCGT 4639 31 100.0 34 ............................... TGCGCCACGATGAATTTTCTCGCCATCTGGCCCC 4574 31 100.0 34 ............................... GGCTTTTTGGAGCGGGGTTTGTACAGTGTCAAAG 4509 31 100.0 34 ............................... TTCCCTCATGATACGCTCAATAACAGCCTGTCGT 4444 31 87.1 0 ..................T....G..A...T | ========== ====== ====== ====== =============================== ================================== ================== 7 31 98.2 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GAAGATTCCCCTGCTGGGCTGTATGGCCTCCGCCATCTCCGTGGTGCTGGTATGGCTGTTGAGCCTGAACAAGTGGACGCGCAAGAGCATCATGTAAAAGCCCGGATGTTTTCCCAAAGGCGCTTCAGGACGGCAGCAATGCTCCTGAAGCGCCTTTTGTATGGAGGGGCGGGGAAAACGGTATTCCCGGGAAAAGGACTGTGTAAAATTCTGGACGGAGGAAAAGGCGCGGGTTAGGATGTCCCTGCATCGTGCACAGGCCCAGGTTGCCGGAGACGGTTGCTTTTTACAGAAGAAAAAGCATAGTGTCCGGTCTCCCTTGCGCCAACCCCAAGCTCACAGGAAATTCCCGGGACACCGGCGATTCCTGTAATCCGTTGGGAATCATATCTTGACAACAATGATCTCTTTTTTACGGCCTGGAATCCATGCATAGGCATGGGAGGTTGGCGCAAAACGCCCACGGCGTTATTGATAATCAACCTGTAAACCCCCAGGCT # Right flank : ACGCTGCAGGAACAAGGAACCCGTGCGGAAAGCCAATGCCATTGGGAGGCTTTACCAGTCGGAGAATGCATGCCCGGCAGCGCAGGTATGACAGGACGGCGGCGCGGACCATATTGCGGCGGCATGTTCCGCGTGGTTCTTTTTTGATATGAAAGTTCTTTTACTATGAGCGTTTTGTGTAAAATTTACGTATCCGTTGTTTAACGCTGGACCGGGAGAACTGGCTGAGCGGGAGCCGGGATGGATGAGGGAAACGTCCTCATTCTTGATCTTTTTTCTCTGAATGCTGTCAAAGGTTTATACAGTATGAACGTGCACGATCAGGTAGAAAGAATACCGGCAATGGAACATTCAGTGATTTTTCCGGACCATCGGAAGGTTTGCGCCCTGGGGCAGGGAACCTGGAAGATGGGAAAATCAGCGTTAAGGGAGGCTGAAGAGATCAGGGCGCTGCGCGCCGGCATTGAGCTGGGCATGAGCGTGGTTGACACGGCTGAAAT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 408384-409220 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKA01000010.1 Akkermansia muciniphila strain GP24 scaf-10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 408384 33 100.0 34 ................................. CAGTTCCTCAATGCTCCTTCCGTCGTCCGCGGCA 408451 33 100.0 34 ................................. CGCTTGGCCCCATGGTCCAGCCGTCAAAAGTGAC 408518 33 100.0 34 ................................. TTCGGCAAACTCTGGACGGTCATCAGCGCGCTGG 408585 33 100.0 34 ................................. CGGATGAGTGCCGTGCTGCCGGATGGCTGTGTGG 408652 33 100.0 34 ................................. TTTAAGAACAGCAAGGATGCCTGTGAGTACGCAG 408719 33 100.0 34 ................................. ATCAGTGTCGTCTTCTTCCACGCGAAAGAATGGC 408786 33 100.0 34 ................................. CCCTTGCTGGATATAGATTCTTCCTTTTTCGTCA 408853 33 97.0 34 ...........C..................... GTCCGGATTGCCCCAAACGCCCGCATAAGGCTGA 408920 33 97.0 34 ...........C..................... ATGTACACTTCCCGCGTGTCCTTCCGTTCATCAA 408987 33 97.0 35 .................G............... GTACAGGGTGTAAGGTTGAGAGTTAAGAGTTGAGC 409055 33 100.0 34 ................................. GCCCTCCTACGGCTCGTCGGCGTGGATTGCCCTG 409122 33 97.0 33 .................G............... TGCCAAGGTCGGCAAATTTACTACGTGCAGGGT 409188 33 84.8 0 ...A.......C..........C......G..T | ========== ====== ====== ====== ================================= =================================== ================== 13 33 97.9 34 GTCGCATCCCATACGGGATGCGTGGATTGAAAC # Left flank : TGCTTCCCGCAAGATCACGGGTAAAAACCCTGCAATACCGCTCCGGCATCACGGCCTACTACATCCTGAACATCTACCCGGACTCCATGACGCTGGACACCTACGCCGCCCCCAACAACGGCGTTACCGACGAAGGCCCCAAAAGCGGCGAATTCAAAAAACTGCACTCCTACGGGATTCCGATGAATTAAAAACCGGAATCTACGCGGCCCCAACTCCATACGGGAAAGGAAACTGGACTCCTTCACCCGTTCCGGATAAACTTGAACCCAACGCGGCCAGCAGGCAGATGAGGGCAGATGAAGCCTCCTTCCCCCTGCTTGCGCCAACCCCAGGCTCACAGGAAATTCCCGGCAGACCGGCGGTTTTCATAAAGCCTTGATTTAAGTACATTGACATCATTGGAATAAAAACTACGGACTTGAAAATAACAGCACGATGAACAGGTTGGCGCAAAACGGCAACTGCACCACTGACCATCAACTGTTAACTTCCAAACC # Right flank : TGAGCCGTCCGCCAGAATTATGGAAGAGACTTTCCGTCAGATACTGCATGAAATGTGCGGATATTCTTGATCCCGTAATACATGGCCGCTCCGCGGTTGACGTAGTCATCCGGGTTTTGGGACAGGTCTACCCAGAAGATGAAGGAGCACCAGGGGGAAGGAGCCACCAGGGAAGGAACAACGACTTCCTGAACGCCTGCCTTTTTCTGTTCCAGAATCAGCCGGACGCGCTTTTCATGCTGGCGGAACAGGAGCAGGTGGTCGTGAAGGGTGGAGAGAACGCACAGTCCGGACAGAACCAGAAAAACGGCTGTAAAGATACGGGGCCGCGGCATGGCGCAGGGAATGTCGTACCAGGCGCGGAGGAGTGCCAGCACGCCAATGCCGAACAGCAGGGTGGCGGAGAACATGGCATGGTCCGCCGGAACAACGGCGGCGGCAAAGGAGAGAGCCATGGCGTATGCCGTCAAAATATATGCCGCAGCCGCTCCAATCTGGGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATACGGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.30,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 593279-593698 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKA01000013.1 Akkermansia muciniphila strain GP24 scaf-13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 593279 31 100.0 34 ............................... CAGGGCAGGCCAGAGCTGGTTTTTTACCTGGCGC 593344 31 100.0 34 ............................... TAAGATTTTTTACCCGTGAGGGAGAACATGAACG 593409 31 100.0 33 ............................... CGGTACACTGTAGAAAAGCTCTGGAACGCTAAA 593473 31 100.0 34 ............................... TATCAGTCGGATATGAGGCGGCGGAACTTCCATA 593538 31 100.0 34 ............................... TTCTAAAATCCGGTAAATCCTCCGCAAGCTGTAC 593603 30 96.8 35 ...........-................... TGGAATGGACTCCCCCTTTTTAGTTTTACATTTTG 593668 31 93.5 0 .....................AA........ | ========== ====== ====== ====== =============================== =================================== ================== 7 31 98.6 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CTCGGAGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGTGTCGCCATCAAGGACTTGCTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGGCGGCTGCTGATGCCGCAAAACACTTCAAGGCCGCTCCATATTGAATGGAGCGGCCTTTTGTTTTCGGAATGGCAGAGAAGGAAAAAGTTGCTGGACGATAGGCCGTTGACCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATGCTGAACCGCTGATCTGTTTGCGCCAACCCCAAGCTCACAGAAATTCCCCGGGAGATCGGCAATTTCTGTAAGTCCTTGAAATCAGCAGATTGACATTCCCTCCAATAAAATATAAGGCGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTCAACGCATATCCCCTTCCGCC # Right flank : CGGGAATCCGGCCATCTTTTTTAAATACCCTCATGGGGTGTGAATTGAATCCCAAAATGGGTAAATGAACTTTGTCCAATTGAAACAAGCATTCTGCAGGGATTTCTATTATTATGAGGAACAAGGATACCAGTGCTTTGTTTTTTATTCGATCGGTTATTGCTGTCAGGAGGTATGGAATTAATTCTGAGTAACAAGTATTTAATTAAGAAAGGGTATTGATTTGCCGTTCAAAGAGGTTGTGTGCTGAACAATAGGTATCAGACATTTCAATAGACGGGCATGTGGACAAACATTGAACTTCCAGAAAAATAATGCATTTGATATAGTGAATCAGTAGCTTGTCTTTTAGAATGCTGCGTATTTAATTACATTGAAAAGAGTTGGTATAATGATCAGGAAGTGCTTGGAATCGGAATTGGAGACGATCTATGAAATTATCAACGATTCTTCCATAGCCTATAAAGACAGGATTCCCGCTGACAGGTGGAAAGAGCCTT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 603140-603306 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKA01000013.1 Akkermansia muciniphila strain GP24 scaf-13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 603140 33 100.0 34 ................................. TTCGCAGGCCGTCTGAAGCATGTCCATCACTTGG 603207 33 100.0 34 ................................. TCCACACATCGCCAGGAGCGATTCCGAATCGTTC 603274 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 3 33 100.0 34 GTCGCACTCCACACGGAGTGCGTGGATTGAAAC # Left flank : AGTAAACCATGTACATTCTCATTACTTATGACGTCTCCACGGAGGATAAGGCAGGGCAGCGCCGCTTGCGCCAGGTTGCCCGCGCCTGTGAAAATATCGGGCAGAGGGTGCAGAATTCCGTATTTGAATGTGAGCTGTCTCCGGCCCAATTGGTTGACATCAGAAGCAAGCTGCTTAAAATTATTGATAACGAAAGCGACAGCCTGAGGATTTATCACATGGGTTCCAATTGGCATCATAAAATAGAACAATTGGGGAAGGAAAAAAGCTATGATATTTCCGGCCCCTTGATTATTTAAAGACTGTTGAACACGGCCTTTGCGCCAATCCCAAGCTCACACAAATTTCCCGGGAGGCCGGCGATTGGTGTAACGCGTTGGAAATTGAATATTGACAGATGATCGCCTAGAGAGGGAGACCGTGCAATGACGGTCTTCTCCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAGTAACAGTGCATATGATCATACGCA # Right flank : CCATGTCCAGCCCTGAAAAGCCGGGTGGGACTGGTAGTCGCACTCCGCATGGAGTGCGTACTGTTGCCTGACAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTGTGGTGATGCAGCATTAGATTTCAGGAAGGAGCCTGGTCGTCCAGATTGAGTTCTGCGGGCGGGATAGCCTGGAGCAGGGCCAGAATAGGGTCCTGCGTTGCGGCTCCCGTTTCCTGCCTGCGTCTGAATTCCTCTTCTTCCTGCTGGAGGGCAGCCAGCTTGGTGTCTTCCACCAGGGCCTTGAATTTGTCTGCTTGGGAGTATTCGCCGTCCGTATCCCGGAAGACCCGGGCGAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGAGTCCTTCATGTGCCGGGGAGGGTATTTTTGTCCAGCAGGTTTCCGGCCAGCTGCTCGCCTTCCGCCGTGGGGCGGTACACGTAAGGGCGGCAGTCTCCGAACCGGTTGACGTATC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCACACGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //