Array 1 962828-964871 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078533.1 Salmonella enterica subsp. enterica serovar Typhimurium strain Colony560 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 962828 29 100.0 32 ............................. GTCACCNNNNNNNNNNNNNNNNNNNNNNNNAT 962889 29 100.0 32 ............................. GTTNNNNNNNNNNNNNNNNNNNNNNNNNNCCT 962950 29 100.0 32 ............................. GGCGNNNNNNNNNNNNNNNNNNNNNNNNACGA 963011 29 100.0 32 ............................. CCAGCGTNNNNNNNNNNNNNNNNNNNCGGCGT 963072 29 100.0 32 ............................. CAGGANNNNNNNNNNNNNNNNNNNNNTTTTGG 963133 29 100.0 32 ............................. GTCNNNNNNNNNNNNNNNNNNNNNNNNTCCTC 963194 29 100.0 32 ............................. ATTNNNNNNNNNNNNNNNNNNNNNNAGGTACA 963255 29 100.0 32 ............................. ACCGGNNNNNNNNNNNNNNNNNNNNNNCCGAT 963316 29 100.0 32 ............................. GCGGCNNNNNNNNNNNNNNNNNNNNNCGGCGC 963377 29 100.0 32 ............................. GCGNNNNNNNNNNNNNNNNNNNNNNNNGCGAT 963438 29 100.0 32 ............................. AAAAAANNNNNNNNNNNNNNNNNNNNNNNGGC 963499 29 100.0 32 ............................. GCAACNNNNNNNNNNNNNNNNNNNNNNNGGTT 963560 29 100.0 32 ............................. AGTNNNNNNNNNNNNNNNNNNNNNNNNNNCAG 963621 29 100.0 32 ............................. ATTNNNNNNNNNNNNNNNNNNNNNNNNNNGGT 963682 29 100.0 32 ............................. ACCANNNNNNNNNNNNNNNNNNNNNNNTACTG 963743 29 100.0 32 ............................. AAAAAANNNNNNNNNNNNNNNNNNNNNNNTGA 963804 29 100.0 32 ............................. ACGCNNNNNNNNNNNNNNNNNNNNNNNNAACA 963865 29 100.0 32 ............................. AAAAAAGNNNNNNNNNNNNNNNNNNNNNNTGA 963926 29 100.0 32 ............................. ACGCGANNNNNNNNNNNNNNNNNNNNNNNACA 963987 29 100.0 32 ............................. CCGGANNNNNNNNNNNNNNNNNNNNNAGCCGG 964048 29 100.0 32 ............................. ATCTTNNNNNNNNNNNNNNNNNNNNNNGGATC 964109 29 100.0 33 ............................. GCTTNNNNNNNNNNNNNNNNNNNNNNNNCCAGC 964171 29 100.0 32 ............................. GTGATCGCGAGTGCNNNNNNNNNNNNNNAAAT 964232 29 100.0 32 ............................. GTGAGGTNNNNNNNNNNNNNNNNNNNNAATGA 964293 29 100.0 32 ............................. AGGCTNNNNNNNNNNNNNNNNNGGAACGCGTC 964354 29 100.0 32 ............................. CGACGCGCNNNNNNNNNNNNNNNNNACCGAGC 964415 29 93.1 33 ...........................NN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGC 964477 29 100.0 32 ............................. ACCNNNNNNNNNNNNNNNNNNNNNNNNNNGAT 964538 29 100.0 32 ............................. GTANNNNNNNNNNNNNNNNNNNNNNNNAATTC 964599 29 100.0 32 ............................. CTANNNNNNNNNNNNNNNNNNNNNNNNTTTTG 964660 29 100.0 32 ............................. CGNNNNNNNNNNNNNNNNNNNNNCTGGGTGAG 964721 29 100.0 32 ............................. CGNNNNNNNNNNNNNNNNNNNNNNNNNNNGAG 964782 29 100.0 32 ............................. CCGGTANNNNNNNNNNNNNNNNNNNNNNCCGA 964843 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNACGTGTTCCCCGCGCCAACAAGGATAGCCGTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 981439-984213 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078533.1 Salmonella enterica subsp. enterica serovar Typhimurium strain Colony560 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 981439 29 100.0 32 ............................. CGGTNNNNNNNNNNNNNNNNNNNNNNNNNCTG 981500 29 100.0 32 ............................. GAANNNNNNNNNNNNNNNNNNNNNNNNNNGTT 981561 29 100.0 32 ............................. CCCNNNNNNNNNNNNNNNNNNNNNNNNNNCCT 981622 29 100.0 32 ............................. GCGNNNNNNNNNNNNNNNNNNNNNNNNNCGAT 981683 29 100.0 32 ............................. CCAAANNNNNNNNNNNNNNNNNNNNNNNTATT 981744 29 100.0 32 ............................. AAGGNNNNNNNNNNNNNNNNNNNNNNGTCATT 981805 29 100.0 32 ............................. GTAGGNNNNNNNNNNNNNNNNNNNNNNTGAAC 981866 29 100.0 32 ............................. GTGGCNNNNNNNNNNNNNNNNNNNNNNGAGTC 981927 29 100.0 32 ............................. GAGGNNNNNNNNNNNNNNNNNNNNNNCCGGGC 981988 29 100.0 32 ............................. TGGNNNNNNNNNNNNNNNNNNNNNNNNNNACG 982049 29 100.0 32 ............................. GCAACCANNNNNNNNNNNNNNNNNNNNNNACC 982110 29 100.0 32 ............................. GGAGNNNNNNNNNNNNNNNNNNNNNNNNGTTG 982171 29 100.0 32 ............................. AATNNNNNNNNNNNNNNNNNNNNNNCAAAAGG 982232 29 100.0 32 ............................. TGTTNNNNNNNNNNNNNNNNNNNNNNACAGCG 982293 29 100.0 32 ............................. TGGATNNNNNNNNNNNNNNNNNNNNCGCTGCG 982354 29 100.0 32 ............................. TTTNNNNNNNNNNNNNNNNNNNNNNNNNATGG 982415 29 100.0 32 ............................. CCATATNNNNNNNNNNNNNNNNNNNNNNNAAA 982476 29 100.0 32 ............................. GCGGGTGANNNNNNNNNNNNNNNNNNTCACGA 982537 29 100.0 32 ............................. CCGTNNNNNNNNNNNNNNNNNNNNNNNNNNGT 982598 29 100.0 32 ............................. GCCCNNNNNNNNNNNNNNNNNNNNNNNNNCCA 982659 29 100.0 32 ............................. CATTGGNNNNNNNNNNNNNNNNNNNNNCGTAG 982720 29 100.0 32 ............................. CGTTCNNNNNNNNNNNNNNNNNNNNNNNNTTT 982781 29 100.0 32 ............................. GTGNNNNNNNNNNNNNNNNNNNNNNNNNNAAA 982842 29 100.0 32 ............................. GCAGNNNNNNNNNNNNNNNNNNNNTACCGACA 982903 29 100.0 32 ............................. GTGTGNNNNNNNNNNNNNNNNNNNNNNNNTCT 982964 29 100.0 32 ............................. AGCCCNNNNNNNNNNNNNNNNNNNNTGTCGGT 983025 29 100.0 32 ............................. CCATGNNNNNNNNNNNNNNNNNNNNNNNAGCC 983086 29 100.0 32 ............................. TGGATAANNNNNNNNNNNNNNNNNNNNNNGCG 983147 29 100.0 32 ............................. CGGCNNNNNNNNNNNNNNNNNNNNNNNNNCCA 983208 29 100.0 32 ............................. GGCNNNNNNNNNNNNNNNNNNNNNNNNNNGTG 983269 29 100.0 32 ............................. CGAANNNNNNNNNNNNNNNNNNNNNNNNNNAG 983330 29 100.0 32 ............................. GANNNNNNNNNNNNNNNNNNNNNNNNNGGAGC 983391 29 100.0 32 ............................. AAATTANNNNNNNNNNNNNNNNNNNNNNNNTG 983452 29 100.0 32 ............................. GAATNNNNNNNNNNNNNNNNNNNNNNNGGAGC 983513 29 100.0 32 ............................. AAATTNNNNNNNNNNNNNNNNNNNNCGCAATG 983574 29 100.0 32 ............................. ACTCAGGCGNNNNNNNNNNNNNNNNNNNNNTT 983635 29 100.0 32 ............................. CTGGNNNNNNNNNNNNNNNNNNNNNNNNGCGG 983696 29 100.0 32 ............................. AGANNNNNNNNNNNNNNNNNNNNNNNNNAACT 983757 29 100.0 32 ............................. GGAGNNNNNNNNNNNNNNNNNNNNNNNNNGAC 983818 29 100.0 32 ............................. CCAGCNNNNNNNNNNNNNNNNNNNNACTGCCT 983879 29 100.0 32 ............................. TGGATNNNNNNNNNNNNNNNNNNNNNNNNGCG 983940 29 100.0 32 ............................. CGGCNNNNNNNNNNNNNNNNNNNNNNNGACCA 984001 29 100.0 93 ............................. GCTNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTTTCCCGCGCCAGCGGGGATAAACCGGGTTAACCAGGGGTTTTTCCCCACTATTTCGC 984123 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 984184 29 96.6 0 A............................ | A [984210] ========== ====== ====== ====== ============================= ============================================================================================= ================== 45 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //