Array 1 47515-51843 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063660.1 Synechocystis sp. PCC 7339 plasmid pSyn7339_1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 47515 36 100.0 39 .................................... CTACCTTACTCTGACGGAACATGACCGCTTTGGCCTCAG 47590 36 100.0 43 .................................... GAGAGATTCCTCTTATATAAACCTAATACTAAGGTAGTACTTG 47669 36 100.0 36 .................................... CATCTATGATGTGGTGCTCTATGAAGCCGCTACCAC 47741 36 100.0 36 .................................... CAGACGTAAGGTTTGGGCATTAGCGCCGCCCTTATG 47813 36 100.0 41 .................................... TCAGCGTAGATATCAGCAGCGGATTTGGGTTGACGACCGAA 47890 36 100.0 37 .................................... ATATACCCGCCGTCCAAAGGAAGTCAAGCGCTTCACG 47963 36 100.0 44 .................................... TGGCTGCTATCAGACGCTCAACCAAGGTAGGCTGAGTTTTATTC 48043 36 100.0 45 .................................... CCCAATTCGGGCTTTCAGTGTCTATATCTAGCATCTTCCCTATTA 48124 36 100.0 45 .................................... CCCAATTCGGGCTTTCAGTGTCTATATCTAGCATCTTCCCTATTA 48205 36 100.0 43 .................................... TGCTCGATCGCCTTGATCTGCTCAACCAATTTTGTGTAGGCGA 48284 36 100.0 35 .................................... TACACTAGCTTATAGCCATTCAAATGCCTTTCTCG 48355 36 100.0 39 .................................... TGTGATCTGCGGTAGGTTTTTTGGCTTTCTCTTTCGAGC 48430 36 100.0 41 .................................... GCAATTAAGCTAATGACCAAGCGGTTATTTCACCTTTACCG 48507 36 100.0 40 .................................... TTCCCCCCAATTTACCAGTGGCTACGGGAGTGGGATCGAT 48583 36 100.0 35 .................................... GTCAGGTTCCGGCTGTGGCGGGCTGACAGCTTTAG 48654 36 100.0 38 .................................... AGCTCAGGTTCTCTATGGCCTGACTGTGGATGGATAAT 48728 36 100.0 42 .................................... AAAGAGCGCGCGCTAAAACTATTCCACTTGGATGAAATTAAC 48806 36 100.0 37 .................................... ATCTTTGGTACGTTTGACAAAAGGTACTAATAAACTG 48879 36 100.0 38 .................................... ACATGCCCTATGGCCCCCAAACCTTCCTTGCAATACCC 48953 36 100.0 38 .................................... ACATGCCCTATGGCCCCCAAACCTTCCTTGCAATACCC 49027 36 100.0 43 .................................... TAGGAATACTTTGGAGCTAGACACGGGATTACCTCATTAATTT 49106 36 100.0 39 .................................... TCTTCGATGCTGATGACAGCGAGCGTAACGTCCCCATCT 49181 36 100.0 43 .................................... TAGGAATACTTTGGAGCTAGACACGGGATTACCTCATTAATTT 49260 36 100.0 39 .................................... TCTTCGATGCTGATGACAGCGAGCGTAACGTCCCCATCT 49335 36 100.0 43 .................................... TAGGAATACTTTGGAGCTAGACACGGGATTACCTCATTAATTT 49414 36 100.0 39 .................................... TCTTCGATGCTGATGACAGCGAGCGTAACGTCCCCATCT 49489 36 100.0 44 .................................... CAGTTATCTTGCTACTGTCTACGCCCACGGGCGCTTTGACGTTA 49569 36 100.0 41 .................................... TAAGCTGTTCTTCTTCGTAGCAGGCATAATCATTAAGTTCA 49646 36 100.0 42 .................................... TAGGCGGACCTTGTTATCATTCAGCAGGATTCACAATAGATA 49724 36 100.0 40 .................................... GTAATCAGCATATTGGTGATTCATGGCTTCCCCTCCCCCA 49800 36 100.0 42 .................................... ACTTATCAGCAGCTTGCCACAAATTACTCCCTACTCCAACAA 49878 36 100.0 43 .................................... TTAAAGAATCAGGCGACGGCTCAAATTATTGATAATGCCATTT 49957 36 100.0 40 .................................... TCAATTTTAGGATCATTGAGAAAGTCACCCAATACTACAA 50033 36 100.0 42 .................................... TTTGATTACCTTTGTTAAAATGTTTGTTAGGTGGACTACTTG 50111 36 100.0 42 .................................... TTTGATTACCTTTGTTAAAATGTTTGTTAGGTGGACTACTTG 50189 36 100.0 39 .................................... CCGTTGGCGATAGGTAGATGTCCCTCCCATACAAAACGA 50264 36 100.0 39 .................................... CCGTTGGCGATAGGTAGATGTCCCTCCCATACAAAACGA 50339 36 100.0 42 .................................... ACTTATCAGCAGCTTGCCACAAATTACTCCCTACTCCAACAA 50417 36 100.0 43 .................................... TTAAAGAATCAGGCGACGGCTCAAATTATTGATAATGCCATTT 50496 36 100.0 40 .................................... TCAATTTTAGGATCATTGAGAAAGTCACCCAATACTACAA 50572 36 100.0 42 .................................... TTTGATTACCTTTGTTAAAATGTTTGTTAGGTGGACTACTTG 50650 36 100.0 42 .................................... TTTGATTACCTTTGTTAAAATGTTTGTTAGGTGGACTACTTG 50728 36 100.0 42 .................................... TTTGATTACCTTTGTTAAAATGTTTGTTAGGTGGACTACTTG 50806 36 100.0 37 .................................... TTAAGAGATTTAAGGGCGTCGGCAATTTGTTGTTTAG 50879 36 100.0 38 .................................... CCGATAGCATTCTGCCAGAAAATTACATTTCCATCTAG 50953 36 100.0 39 .................................... CCGTTGGCGATAGGTAGATGTCCCTCCCATACAAAACGA 51028 36 100.0 39 .................................... CCGTTGGCGATAGGTAGATGTCCCTCCCATACAAAACGA 51103 36 100.0 36 .................................... ATGGTGAATATGGGGTGATAAAATCTACCCTGATTA 51175 36 100.0 43 .................................... CATACCCACTTTTTTATGAGCATAACCATGTTTAATTATTCTT 51254 36 100.0 43 .................................... CCTCTTCATCTTTGCTGGTGTCAACCAACGCTTCGGGGCGTTG 51333 36 100.0 45 .................................... TAGCACTGGCCACGATGGCTTTAGCTTTGTCTTGAAAGTCCTCCA 51414 36 100.0 44 .................................... ACCGCCACTCCGCCTTCCTCTGGAAATAAGTCAAAGGCTTGGGC 51494 36 100.0 44 .................................... TTCATTTACTAGGTCATCTGCAATTTTTTCGGTCTTTTTGTCTA 51574 36 100.0 44 .................................... ACCGCCACTCCGCCTTCCTCTGGAAATAAGTCAAAGGCTTGGGC 51654 36 100.0 44 .................................... TTCATTTACTAGGTCATCTGCAATTTTTTCGGTCTTTTTGTCTA 51734 36 97.2 38 ...................................T GTTCTGTTCAGTTTAACGTCGATGAACCGGACGATTAA 51808 36 91.7 0 ...................GG..............T | ========== ====== ====== ====== ==================================== ============================================= ================== 57 36 99.8 41 CTCTCCATTCCTAGGAGAAACTAATTGATTGGAAAC # Left flank : TTAATTCGTTAATTGATGCTTTTCTATGTCATTACCTACGATATTCCTGATGATCGCCGTCGCAAAAAAGTAGCTGATTTGTTGGAGGGCTATGGCCAAAGGGTGCAATATTCCGTTTTTGAATGTACGCTGTCTAAGTCTAAGCTCCAGGAATTACAAAACCGTCTCCGCAAAATTTACCAATCGGAGGAAGATAGTTTACGCTTTTACCCTTTATCTCGGCATACCCTAACCCAAGTGGATGTCTGGGGGGAACCGCCGTTAACTGAGGCTCCTGGATCAGTCATTGTTTAAAGTCTATGATGATCATTGATGTACTATTGCGAGGCTGATGGAAAATCGCTGTAATGTCCATTTCTCGTTAGGAGCCTCGATAGCTCGCTGTGTAAGGCTTTCAGCTCTTATTTTCCCCTTGGAATTTCCCAATTACGGTCAATTTTTGCTGAGCCTCGCAAATGGGCATTGGATGCCCTATTCCATAAGGGTTTAAAATGGGGTCA # Right flank : TCTATTACCTTCTCCGCATTTTCCCTGCTCATTTCTAGCCAAATATCAATATCTTTCGTATATTTGGGATGTTTATGAACTGCTATAGCATATTCGCCAATAACTAGATATTTAACCTGATTTTCGTTTAATAATTCTATAAACTCTTTGAAGTCTTGGTTCAGCATTGTATTTGTATTGGTGATATTGTTGGCGAATTTGTTCTAACGCTTCTAATCGTTTTTCTGGTTTTTGCTGTTGCTAGTAAAAAAAAATTACTTGCTTGTTGTTGTTTAGTGGTTTTGTAAACAATTTTTTCCATATTTGCTACTCAGAACCGATTATTGTGGCTGATTTTTTAAACAATTGCCCCCCAGAAGTTCGCAATCGGGGAGGCTCGCAAACCAATTTTTGGTTACAGCGACATGGACGGCAACCGTAACAAAGTCCGTGTCCGTTTCAAATATTTTTTGGCTGTGTCATACAAAAGAGCTAAATCCGAGGCAATATCCTTGAGGGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCCATTCCTAGGAGAAACTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 3325667-3324619 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063659.1 Synechocystis sp. PCC 7339 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 3325666 36 100.0 39 .................................... AAAGGCGTTGACGCAAACCAATTTGACCGCTGGATCCGT 3325591 36 100.0 38 .................................... TTTTGAAAGGCGCTAGGGTCTATTAATAGTGCTCCCAA 3325517 36 100.0 34 .................................... GAAGCCAACGACAAAAACCAATTTGACCGCTGGT 3325447 36 100.0 39 .................................... AAAGGCGTTGACGCAAACCAATTTGACCGCTGGATCCGT 3325372 36 100.0 38 .................................... TTTTGAAAGGCGCTAGGGTCTATTAATAGTGCTCCCAA 3325298 36 100.0 34 .................................... GAAGCCAACGACAAAAACCAATTTGACCGCTGGT 3325228 36 100.0 35 .................................... ACTGGTTCCCCCTAGCGGCCCTGGGGGCGGGGACT 3325157 36 100.0 35 .................................... ACGACTCTTCAATCCTAATAAATAATAGGATGATG 3325086 36 100.0 36 .................................... GTCAGCCGGCCCGAGCTGGCCTGCGATCCAAATGTA 3325014 36 100.0 35 .................................... GCTAGTGTTTTGATTCCTAAAATGGCGACTTTTGC 3324943 36 100.0 34 .................................... AATAGCTACGATGCTCCCCGGCAAGCCGCTACAG 3324873 36 94.4 37 ...T.C.............................. CCTCAAGTAAGGCGGGGGGAAGTTCAGTAACCAAGCC 3324800 36 94.4 36 ...T.C.............................. ACTGGAGTTAGTTACAAAAAGGCCAGCGGTGCGGCC 3324728 36 94.4 38 ...T.C.............................. TAGACGCGATAGTTCTTCCCCGGTACTAATCCCCCTTG 3324654 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 15 36 98.9 36 GTGCCTAAACCATTGATGCCGTAAGGCGTTGAGCAC # Left flank : GTCCTAAACGCTGGCGTAAAGCTTACAAACTACTTGAGGGGTATGGCGATCGCCTACAATACTCAATTTTTCGCTGTTGGCTTAGTCAACGAATGCGTGAAAAGTTGCGCTGGGAGTTGGAAAAGATTCTGACTCTGGATGATGACCTAATTTTAATTAGGCTGTCAGCTCAATGTGTCAAGGATTTACCAAAATATAATCGCCAAAATACTTGGATACTAGAAGGGGGTGGCTTTCGGGTCATTTGACTAAGCGCAAGGATCGGTCTTTGTTTTCTCACCAACTCTGTTTAAGCAGTCCCAATGCCTTATCTGATAATCCATTGAGGTCTTTCCTCTATCAGTTAGATCCTTGTAAACGCTGTATCCCTTGTCCTGTCTAAATTGTGCAAACCTCTTCTACTCTATTTTCCTTGACTTGTCTTTTTTGAAATTTGAGTTGTTGAGCACCTTGTAAAATCCTTGTAGAAGGTACGCATGCTAATCTTTTTGAAAGTCGCC # Right flank : GAAATTATGAATTTTCCGAATATTAACAGAGCATAGTTATGGGAATAGGAGATTTTGGAAGAAACCGATCGCCTGACAAAAACATCAAGACTGAAATGGGAAGTGTTGGAGTAAACGCACCTGGGCAATCGTCTCAAAATCGCGATCATTGTGAACCAACAGTAAATCATTCTCCAAAGCAACTTGAGCGATACAGCAATCAATTGGACTGCGAACCGTTAGCCCCTGACGACGCAAATCATAGAAAATTCGCGCTGCCTTTTGCCAGGAATCATTTGTCAGTTCCACGTAGTCCTGAATTTCAAGATAGGTGGAAAGAAGCATCCACTCTTTTTCATTCAAACTCCCCTGAAGCAGTTCAAGCTGAGTGAAACGTGCTAGAAAAACACCACGATCGCCAATTAGTGTTTCGAGTTGTTGACGGACTTGGCGTGTGCGGTCGCGGAAGACACTGATCCACACAGAAGTATCAATCAGTAGCATGACGAGTCTGGCGCAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCTAAACCATTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA //