Array 1 1007630-1009392 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012390.1 Lawsonella clevelandensis strain X1698 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 1007630 36 100.0 28 .................................... GGTGACGGGTGAACACCTCCCCGAGGTC 1007694 36 100.0 28 .................................... TGGGGATGAGTATAAGCAAGTAGCATCG 1007758 36 100.0 28 .................................... GGTCAAGTTTGGAACTGCAGTCCGGCTC 1007822 36 100.0 28 .................................... GTGACCTCCCGGAAGTGGCGGATCATCA 1007886 36 100.0 28 .................................... CGCCCGTGATTGTTCCGCTCGACCCCAC 1007950 36 100.0 28 .................................... TGCCGAACGTTCAGGTCTGAGTGATCTT 1008014 36 100.0 28 .................................... GTGGGATCGTGAGGGGCGGAAAGTTCCT 1008078 36 100.0 28 .................................... TGATGTGGATGAGTGTCTTTTCGCGTGG 1008142 36 100.0 28 .................................... CGTATTGGTGCAGAGGTGCCGTACCGGG 1008206 36 100.0 28 .................................... TACGTCGGATATTGTCTTTGAAGTAGGT 1008270 36 100.0 28 .................................... GGCTGATCCGCTGGGCATTGACGACTTC 1008334 36 100.0 28 .................................... GTGCTCGCAGTTGCTGCTGTGGGCACCT 1008398 36 100.0 28 .................................... CGTATCCTGTTGAGTCTCTAGCCGCACG 1008462 36 100.0 28 .................................... GCGATCGCACTGGTCAGTTGAAGGCGAG 1008526 36 100.0 28 .................................... AATGAAGCTCGTATGTGCTCAAACCGGC 1008590 36 100.0 28 .................................... TCATTGAGTAGTCGAAGGAGTAGCCACT 1008654 36 100.0 28 .................................... AACGTCTGTTGACGTCTCTTCTGCCGAT 1008718 36 100.0 28 .................................... TGCGGTTTGAGGATCGTAGGTGTTGAAA 1008782 36 100.0 28 .................................... ACCATCGCCGGCATGATCAACGGAGCAG 1008846 36 100.0 28 .................................... TGCCACACGGGTTTAATGTCCGCGTCCA 1008910 36 100.0 28 .................................... CGCCGCACTCATGACCGTACTGGTCAGC 1008974 36 100.0 28 .................................... TGGCGATGAGTATAAGCAAGTAGCATCG 1009038 36 100.0 27 .................................... TTTTGGCTCGGTTGCAGGAGGAGTGGG 1009101 36 100.0 28 .................................... CTCCCTTGGGCTATCCGAAGGGCGCGAG 1009165 36 100.0 28 .................................... GGCCTTACGGGCAGCCTTGATAAACTCC 1009229 36 100.0 28 .................................... TCAACCATCACGCTTACTATCCCGGATG 1009293 36 100.0 28 .................................... TAAATGATGAAAGAGTACACGGTGTGGA 1009357 36 97.2 0 ..G................................. | ========== ====== ====== ====== ==================================== ============================ ================== 28 36 99.9 28 GAAGTCTATCTGCAGGTTCTAGAGAAGAGAAACAAC # Left flank : ATTTGCACCGGGGGGCGACACGCTCCCAACGGTAATTCAAGACCTCTGTACAGCTTTTGGACAGTACGTAGAGGGCGATATTCAAACCTTGCCAGTGCTGTATTGGGAAGGCCCTTTTGTGGAGTAAGTGATGAGTGAGCAAAAAGTGTGGTCACTAGTCATGTTTGACGTCCCAACGAAAACTAAAACCCAGGTTCGTGCCTACACTCAGCTTCACAAGGAGCTACTTTATCTGGGCTTTACTCACCTTCAACATAGTGTGTACGCCCGCTACGTTCCCTTTGTGGAACCTATTGCCGGTATTTACAAATGTATTAAGGCGATGTGTCCACCCGGTGGAGATATTCGGATGATTCTTATATCCGACAGCCAGTGGGGAAAGCAGGTCAGAATTTTTAATGAGGAGGAAGAAAAGCCCGAAGATCCCCCCGAACAACTCGAAATTTTCTGACCCTAAATGCAGTAAACATGCAGATAAACCCCTGAAAATCCGTAGTTCA # Right flank : CTGTGGTTTTGTTCAGGGTTCGAGTCCCTGAAGTCTGTGCAGGTTGGAGAGAAAGGCCGAACTGCGTGTACACACGATCAGGGTCCTAATTTGTGGAACTTCAATTCTAAGAATAGAGCCGTGCTTCCTTCGCTACGACAGCGCTGTCCATACACTTTGACTCTTGTTAGGCGTGGACGCTGGGTGGGAGCATTTTGGCAGAACAGCAGAGTGGTGCGCGCGGAAACACGCACACACCACTCTGCCGTTTTACTGGGACCGGATTGTGGAGGCCTCCGCCGCCACATTCAGTACGGATTCACGATTCACTTGGTGTACACGCTGATGCGTTCGCGTGTGTGTGAGCCGTTTTCAGCTTCGTCCAGCATTGCTTGGGCCATATCTGCGTAGCTCAAGTACGATTCGCCTTTGTCGTTGGTGGCGAGCATTTCTCCAGCAAAGGCGTAGCGGTCGGTGCGTGCTCCATCAGCTTGGAAATCTGCTGCTGGGCTGAGGTATGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCTGCAGGTTCTAGAGAAGAGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 1066056-1064866 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012390.1 Lawsonella clevelandensis strain X1698 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1066055 29 96.6 32 ............................C CGTTCTGCCATTCAGATATGTCGATTCCGTAG 1065994 29 96.6 33 ............................T CAGCGTAGCGGTTCAGCGTCTCCACAGCGCTAG 1065932 29 100.0 32 ............................. ACGGCGGCGGCGGCACCAGCAACCGTGTAGAG 1065871 29 100.0 32 ............................. CATGGTGGCTATCTGACCCCGGCGAAGATCGC 1065810 29 100.0 32 ............................. CTACTCGACCACGGCTGGGGAAAAGAAAAAAC 1065749 29 100.0 32 ............................. CATTCGCATCCCTCTCCGGGGTATGGCCGTCA 1065688 29 100.0 32 ............................. AAGTCGCACAGTACGACTTCCAGGGCAACGCG 1065627 29 96.6 32 ............................C CAGCAAGGCCATTCGTGTAGATCGGGGTTCCC 1065566 29 100.0 32 ............................. TCAACTAGTTTAGTGAAGAAAACTAGTGAACT 1065505 29 96.6 32 ............................T GGCGGTTTATGTACCGGTAAATGCATCAATGA 1065444 29 96.6 32 ............................C TTCAATCCCGGCACCCGATATAGATGGACCGG 1065383 29 96.6 32 ............................T GTTTCTGGGTCGGTGGCCACGGAAACAGATCT 1065322 29 100.0 33 ............................. TCAGGTTTGCCTTGTGGGGTACGGCCCGGCCCC 1065260 29 100.0 32 ............................. CTCTTCCTCGTCAATAGTGATACCGAGCCGCC 1065199 29 100.0 32 ............................. GTAGAGGGACGATCGAGGATGTTGAGCCCGGC 1065138 29 100.0 32 ............................. CCGTCGTCTGCGACTTTCACCACCGAGCGGTA 1065077 29 100.0 32 ............................. CCCGTTAGGCGACGACATATAATCCTTCTCGG 1065016 29 96.6 32 ............................T GGACAAGTCTAGATTTTATTGATGTCCCGGCC 1064955 29 96.6 32 ............................C GCGGTATCAATCTTTTTTGTCTCTCTAAAAAC 1064894 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.6 32 ATGTGCCCCGCGCCAGCGGGGATGAGCCG # Left flank : CAGATTGTGGAGACCTGTTTTTATGGGATGAACTTCAAGCTGTTCCAGCTGGCGTAAATTATGAGGAACAGACAGCATCATGATGGTACTTGTCATAACCGCGTGTCCCGCTGGGTTGCGAGGTGACCTCACAAAATGGGTACTGGAAATAGCCCCTGGTGTTTTCGTAGGAAATCCCGGTGGAAGAATTCGGGATTTGCTCTGGGAACGAACCACTCAACTGTGTCGAGATGGAAGGGCATTGTTGGTCTTTTCCACGAATAATGAGCAGCACATGGAATTCCGCACTCACAATCATGATTGGATCCCTACTGATTTTGATGGCATTACTCTCATGATGCGGCCTGATAATAAGACTACCAATAACAGGCCTCGCAATGGATGGGCTACTGCTCGGCGTCTTCGCAAGTACCGGTAAGTAACATAAGAATATCCGTGTCGCTTATTCTGAGTTAAATGTAAAATGAGCACTGTCTTGCTGTAAATGCAGATCATCAAGT # Right flank : GATAAAGTATGGGCGCGTACCCTGGTCTACGCCGCCAATGGCCTCCCCTGCTACGTCACGCAGGACTACATCAACAAAAGCCGGCACGCCTGCCGCCACAGCCACATCCGCATGTGCGCATGGAACCCGCAGGAATGTACTCTCGCAGCATTTGCTCACAACATCCCTGCCGCCATCCGCCCCGCGCTCATGGAAGCCCTCTACAAACAATGTGACTTCGACAACATTGCCCGAGTTCTAGCCCCAGAAAACTAGAAGATCGTGAATACCCCGCCACCATGCGGGGTATTCCCTTACCGAGAAGAGCCGATATGAATATAAATGCAGAATTTCGCGCACTAAAACAGCTTAGCGGGCTAACATCGCAGCACATCGCGGATAAATTCGACGTCGGACTACGCACTGCACAGCGCTATGAAACTGAATACACGCCCCGCTCCGAAATTATGGAGTATCTGCGGAGCATCGTGGAGGACGACACCCAGTACGTCGAAGAGGTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTGCCCCGCGCCAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //