Array 1 165837-167544 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVKW01000044.1 Moraxella catarrhalis strain 340_MCAT 267_221743_4833912_165_,...,93+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 165837 28 100.0 32 ............................ TCAATCTTTTAAATATGAAGTTTCGCATACAG 165897 28 100.0 32 ............................ TCCCATGTAAACCGCTGTTTACCACGATGAGT 165957 28 100.0 32 ............................ ACTGAGCGTAACCGCATTACCGCCGCCATCTT 166017 28 100.0 32 ............................ ACGATAAAACTGGGTCAAATTGCCTTGTAGCC 166077 28 100.0 32 ............................ TAATCCATGTCCACACTTGCCCCCAAATTGGG 166137 28 100.0 32 ............................ AATCAGGTAGAGCGGTTGTCCATGTTGGTGTT 166197 28 100.0 32 ............................ AGCCGCCCGCACACACACAAAACGCATATAAG 166257 28 100.0 32 ............................ TTTGGCTAAAATGTACCCACATTTAGGCATTC 166317 28 100.0 32 ............................ GTGGGGTCATACGCCCCAAAAATGATGGCCAC 166377 28 100.0 32 ............................ ACAAAGTCAAACACCCACGCTTTACTCACCGC 166437 28 100.0 32 ............................ AGCTTGCCACCGCTCAAAACGAGCTAAGCACC 166497 28 100.0 32 ............................ AATCAGGGGGCAAAGGACGCACGCCACAAATT 166557 28 100.0 32 ............................ CAAAAATGATGGCCACAAAGTCAAACACCCAC 166617 28 100.0 32 ............................ CTAGCCGCTGGCATCATGCTGACCGCTTTGAT 166677 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTA 166737 28 100.0 32 ............................ GAGCAAATACGCAAATTACCGCTCCGAATATC 166797 28 100.0 32 ............................ ATTTTCACGGTTCTGCTGACGCAACGCTCCCC 166857 28 100.0 32 ............................ GAGCTTTGACAAGAAAGCAAGAGCAATTAACT 166917 28 96.4 32 .......G.................... CAGTTGCATGGGAAGCGTTAACCAAGACTAAA 166977 28 100.0 32 ............................ ATGCTGTTATCGCGCTCATCTTTGGGCAAAGA 167037 28 100.0 32 ............................ GTCAAATCTTTTTGAGCTGATTAAACTTCAAA 167097 28 100.0 32 ............................ CTGCTAGTCGCATGAAAATTAACAGCAATGGC 167157 28 100.0 32 ............................ AAATCACGGATAGATGATGTATGACCATTCAC 167217 28 100.0 32 ............................ AGCTTGCAAATAAAGCAAGTACAGCGTCAGTT 167277 28 100.0 32 ............................ ATGCCTGACACCACACCGCCTGACTGCACTTT 167337 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATC 167397 28 100.0 32 ............................ ACATCATCGCCGACATTTTGCACGATGACAAG 167457 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 167517 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================ ================== 29 28 99.6 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //