Array 1 10432-7104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVBS010000010.1 Acinetobacter baumannii strain KCJ3K928 NODE_10_length_112077_cov_13.173837, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10431 28 100.0 32 ............................ TAACGACGCTAAGGTCGAGGAAGGCTCCGAAA 10371 28 100.0 32 ............................ TCCGTCCTCGGCTGAGATATGGGTCAATTGTC 10311 28 100.0 32 ............................ AAAACGCTAGATGTTGGGCGAGTGCTGCGTCG 10251 28 100.0 32 ............................ TTGATTTTTTCCAGTTTTAAACGAGCTTTATA 10191 28 100.0 32 ............................ GATTACCGTTGCAAGGTTCAAGCGAAGCCGAC 10131 28 100.0 32 ............................ ATTTAGTGATGTGGTGAAAAACTGGTTCGGGA 10071 28 100.0 32 ............................ TGAAATGATTCTTTGCTCTTTAAACCATTACG 10011 28 100.0 32 ............................ ACGCCATACCAACCTTAAATGTAATGCTCCGT 9951 28 100.0 32 ............................ TTCAATGCTGTCAACCTTCTGCTCTAGCAGGT 9891 28 100.0 32 ............................ TTTCAGATGATGTACAGAAGCATGATGAGTAT 9831 28 100.0 32 ............................ TAATCGAACCGGTGTTCACACGCTGGCTTGAA 9771 28 100.0 32 ............................ TAGCGGCTCCCATGCAACGCTTGCGGCTTCAA 9711 28 100.0 32 ............................ AAAACACATGCAGATCTGTCTCAGGATTATCA 9651 28 100.0 32 ............................ TTTCCCGCATAGCCAGACATTAGAGTCGCCAT 9591 28 100.0 32 ............................ AGAACGCCGCGTCGTGCTTCATCAAGCTTAGT 9531 28 100.0 32 ............................ AGACAATGATAGACGGCTTTTTGCCTTGTTCG 9471 28 100.0 32 ............................ TGTAAGCGTTTGTTTGCGCTTAACAGAAGGGT 9411 28 100.0 32 ............................ TCATTAACCTCCCAAGTCATTTGAAACTTGTG 9351 28 100.0 32 ............................ TGAAATACCATTAATAAACAAACAACAATCTA 9291 28 100.0 32 ............................ TTCATGATGCGTTGAGCCAATTCCTCGCTTGT 9231 28 100.0 32 ............................ TGAAGTTAGCATCACAGGAAAATTAACAGTAT 9171 28 100.0 32 ............................ GTTCTGTGCTCACTCAAATCATATTCGCATTT 9111 28 100.0 32 ............................ CTGTTGTGTTTGAGGGTTTGTCTGGTGCGCCT 9051 28 100.0 32 ............................ GTAAGGATGTTGCAACCACTCCGATTGTCGTC 8991 28 100.0 32 ............................ AACACGAGTTTGAGCTAACGTAACATCAGAAA 8931 28 100.0 32 ............................ AGTTGCAGGAGGTGTACTCGGATTTACAAGAT 8871 28 100.0 32 ............................ ACGTTCAACGATAGCAACGTGATTACCATGAA 8811 28 100.0 32 ............................ TGAAAAGCACCGCCTCACAAGCGGAACGCTGC 8751 28 100.0 32 ............................ GAGTTCGGTAAGATCTGCGCGAAGTTCCCTGA 8691 28 100.0 32 ............................ ACGCTATGCCAATAAGTTTATCGTGAGGTATA 8631 28 100.0 32 ............................ TTACTCACCAACTCTTGCGCTACTTGGGTAGA 8571 28 100.0 32 ............................ ATCAAGCTTGAACTTGAGCTGCCGAAGCCTTT 8511 28 100.0 32 ............................ AAATCAACACTCCTTTGACTGGCCTTGATACG 8451 28 100.0 32 ............................ TTTAGCACAAGTCCCGAACCAATTTTTCACCA 8391 28 100.0 32 ............................ ATATTGAGCAGTTCTGATTTGACCAGCTCCAA 8331 28 100.0 32 ............................ ATCCATCCATGTTAATTCATCATTTCCATAAA 8271 28 100.0 32 ............................ TTCAGCATAACCCTAGACATTCCAAACTTCTC 8211 28 100.0 32 ............................ ACTCCAAGAGTTATCAACACAGATTTTCAAAA 8151 28 100.0 32 ............................ ATCCATATTGATTGTCGCAAAAGTGATATTTC 8091 28 100.0 32 ............................ ATTAGGTAGTACAATTTCTTCACGTACAGTTG 8031 28 100.0 32 ............................ TTGTGGAATATTTGCCTCAAGTGTAGCAACAA 7971 28 100.0 32 ............................ AATCAAAATCATTAGCTTGCTGTTTAACTTCT 7911 28 100.0 32 ............................ ATAAATATGACGCCTACATGAGTTTTTAGCCA 7851 28 100.0 32 ............................ ATTCATGCAAGGTGTTAATGCTGCAACACGAG 7791 28 100.0 32 ............................ TAAAGCTTTTGAATGTTGAAAAACATGTTAAG 7731 28 100.0 32 ............................ CTATTTATGATGGCGAGGATAAAGCGGTTATT 7671 28 100.0 32 ............................ CTGTGGGTTGATGGTCAAAATATGGACGTTGG 7611 28 100.0 32 ............................ AAGATTATTGATGTTAAAGCAACTAGCGTTGG 7551 28 100.0 32 ............................ CAAATTGAAGCGATTACAGATAGAGATAATTT 7491 28 100.0 32 ............................ TTAAAATGCTGAAATCTTGATGATTGAATTTG 7431 28 100.0 32 ............................ CCTAAACATTCCTTGTATGTTGTGCACAATGA 7371 28 100.0 32 ............................ ATAGCAATTTCAGACCGCATAGGCTTAACTAC 7311 28 100.0 32 ............................ ATAGCAATTTCAGACCGCATAGGCTTAACTAC 7251 28 100.0 32 ............................ ATTGTAAGGTCGATAGGAATGTCCATTCCACC 7191 28 100.0 32 ............................ ATCCCAGCATCACCATGCTTGGCATAAGTTGG 7131 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 56 28 99.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : ACTTTAAAAATAGAAGCCGTTTTACGTACATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATCCCGCCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTTCCCGTTTTGTTATCTAGCCAATTTTTAACATATTATTTGAAAAATGAAAGTATTGAAGGAGAGAGTTGCAACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGAAGATTAGGTTATATTTTTTAAAAATGGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGTTTCTTCCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTCGTATTAAACTGATTAAAGCTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGACATTCAAACTTTAACAATAAATTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACAAGAGCAATTTTGGATAGCTATGCTATTCGTACAGGATATTCGTCTTGGCAAGCACCAATGACAATGGAAGGCTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACTCGACAAACTGCGGTAGCCGCTTACATTAATTTTGGTGTACGAAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCACACGATGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTACTCATGCTTGATGAATGGGTCAAAGTAAGTAGCTTATTGGCAGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 15521-19689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVBS010000010.1 Acinetobacter baumannii strain KCJ3K928 NODE_10_length_112077_cov_13.173837, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 15521 29 96.6 31 ............................A TAGCCAATGATATGAAGCCCGCGGCCACTGC 15581 29 96.6 31 ............................A TTAGAGTAAGAACCCTTTTTGTATTTGGTGC 15641 29 96.6 31 ............................A GTCGAAGCGATTCCCCCCATCAAAGAAAACA 15701 29 96.6 31 ............................A TTTGGTCAGGGATGCATTAGGCGCTATTGAC 15761 29 100.0 31 ............................. TCATCACCTTGCAAGATTGCAGACATATCAG 15821 29 100.0 31 ............................. TGGGGTGAGAATGTCATTCAGCTTAAAACGA 15881 29 96.6 31 ............................A TGACCAAAGTTTTAGAAATGGATGAACTTAC 15941 29 100.0 31 ............................. CAAGCTGTTCTCTCCTCCTCCGCCTCCTCGT 16001 29 96.6 31 ............................C GCTACAGCGCAAATCTGAAGCATTCAAGACA 16061 29 96.6 31 ............................A CAAACTGGCTACAAGCAATTTTAACCCCTCT 16121 29 100.0 31 ............................. CATTAAAGACCTTAGTTTGTGGGTTTACGCC 16181 29 96.6 31 ............................A ATTCGGATCTGATTAACTGGACTGTCGGTCT 16241 29 96.6 31 ............................G TTTGTTGTTGAGTCGCCATTGGTGATGAGAT 16301 29 100.0 31 ............................. TCAATTTTGGCTATGAAAAATATGATGCGAT 16361 29 96.6 31 ............................A ATGAGAATGGAGAGCCAGCAACAACTTATTA 16421 29 96.6 31 ............................C ATTTCTGAATGAGAAGAAGTGGGCTTTTTTA 16481 29 100.0 31 ............................. ACAAAAAAACAGCTAGCTGCGGGCCCTCGCT 16541 29 96.6 31 ............................A TTTCATACGGTCTATTTGGATTGTACTTGAC 16601 29 96.6 31 ............................G ATCCCATTAGCACGTGTAGTTTGATTCTCGG 16661 29 100.0 31 ............................. TTACTTTGCACATCAGCATAAGAGTTTGTGC 16721 29 100.0 31 ............................. ATCACTAAAACAGCAACCTTCGATACTGAGT 16781 29 100.0 31 ............................. CATAAAAGAAACGGCCATTTTCTGAATAAGT 16841 29 100.0 31 ............................. TCGGGGCTTTTGCTTATATTTGTTGGTACAC 16901 29 100.0 31 ............................. AACTTCAATTTGCCATCCACCAGTTGAAAAC 16961 29 100.0 31 ............................. TAATTTTGTGAATTAGTAACTGCTTGAGGTT 17021 29 100.0 31 ............................. ACTTGCCGAACAAAATGCTCCACGCCCTGCA 17081 29 96.6 31 ............................A TATTGTTTTGTACTCACAAATCAATATGGGT 17141 29 100.0 31 ............................. TGTAATGGGTCTATAGTCCTTTACTGTATCA 17201 29 100.0 31 ............................. TTTGCAATCGTATCAACGGCCCAAGGCGTAA 17261 29 100.0 31 ............................. TCTGCATAGCGTTGCAGCAAATCCATGTCCT 17321 29 96.6 31 ............................A ACACTGGTATAAGGATGGGGGGCGCTTAATA 17381 29 100.0 31 ............................. TGAGCTGCTAACACTTTGGATACCGCATTTT 17441 29 96.6 31 ............................A AGACCAGTTTTGAAGGATATTAACTTTTTAT 17501 29 96.6 31 ............................A TCAGGCTTTTTTATTTCCGATTGCTGTGAAA 17561 29 100.0 31 ............................. AAGTCTGGCCATACATACGACCTTTTAACAG 17621 29 96.6 31 ............................C AACTGAAAAACATCCAAAATATTCAGCATTA 17681 29 96.6 31 ............................A TATTCTGATGAGGCAATCTAAATATATAAGT 17741 29 96.6 31 ............................G TTCTGAGAAAGACGGTAAAGAACGCGCATTT 17801 29 100.0 31 ............................. AAAACCCTACCAAGTACTTACGGTGTCTTAA 17861 29 96.6 31 ............................A CCATCACGTTGTAGGTTCCGAAGAAATTATC 17921 29 96.6 31 ............................A AAACTATCGCGAATTAACGCTTGAACAGTTC 17981 29 96.6 31 ............................A TAAACCAGATCATCACGCGCCTTTTCACGCT 18041 29 96.6 31 ............................A CTAAATACAGGCTTTGACGTAATCTCATAAC 18101 29 100.0 31 ............................. GAACATAGTTATTAGCCTGATAGGACTGATT 18161 29 96.6 31 ............................C TGAAGACACTTTTCTATACCGCTACGTTACA 18221 29 100.0 31 ............................. TGCAATAACTTTGCAGGCGAAGCCTTAATCT 18281 29 96.6 31 ............................A TTCTGTGGAAGGAATGGCGGTAGGTTTGCAA 18341 29 96.6 31 ............................A CCAGAGATTGCAAGAGCAGCCATGCTGACAA 18401 29 86.2 31 ....G.......CC..............G CTACCAGTCTTTGCACCAAGATAATTTTTAA 18461 29 89.7 31 ....G........C..............A AGCGGTCTTGATAGTTCAATGGTTTCTCTCC 18521 29 86.2 31 ....G.......CC..............A CAGTACCGTTCTAACTCGTCAGTGCTTGTTG 18581 29 82.8 31 ...AC.......CC..............G GAGTAGTCCAGTTTTCTTTCTGAGCTCTACG 18641 29 89.7 31 ...GC.......................A CAACTTTTTAAATTTGAATTTATTTTAGCTC 18701 29 89.7 31 ....G...............C.......A TTTGTTGCACAGTAATGGTGTACTACGGGAT 18761 29 79.3 31 ...T..A...T.TC..............A ATGTGCTTTACGGGGATGAGGTATTCTTCCA 18821 29 89.7 31 ...GC.......G................ CACTCGTTGAGCCATAACGCCCCGACTCAAT 18881 29 86.2 31 ...GC.......G...............C GTCAGATTCCAGTAGGTCTAAAGACAGATTC 18941 29 89.7 31 ...GC.......................G CACATAAGGATCAAATTTATCACTTCCTTGT 19001 29 93.1 31 ...GC........................ TATGTGGGGTTTGGGGCGAAGCTCCATATCT 19061 29 82.8 31 ...GC......TG...........A.... CAAGTTTTTTGATACTTGGGAAATGTGTTTC 19121 29 89.7 31 ...GC.......................A GCTATCCAAAGCGTTCAATGATCATCTTCGG 19181 29 89.7 31 ...GC.......G................ ACAGATGCAGACCGACTAGGGTTCAGGAAGG 19241 29 79.3 31 ...GC.......CC........C.....A TATCGAGAGCTTTGTCGATGTAGACCTGCAC 19301 29 89.7 31 ...GC.......................A TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 19361 29 89.7 31 ...GC.......................A CCATTGGACTTGATCCGCTCCTGTGCCGAAT 19421 29 89.7 31 ...GC.......G................ TGCATGTGCAACGGCGCGTACGCTGCTAAAA 19481 29 82.8 31 ...GC.......CC..............A CATGGGAGCTTCCATTTAGATGCGTTATCAA 19541 29 86.2 31 T..A........TC............... GTTTTGCGCGTAGTGCGATTTGTTTTGCATT 19601 29 89.7 31 ...GC........C............... CGCCCCATTCCATCCAAACGCGATTTAAGTA 19661 29 89.7 0 ....G...................AT... | ========== ====== ====== ====== ============================= =============================== ================== 70 29 94.7 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTCGCTGATCTAGTTAAAGATGCTTTTGTAATGCCAATTGCTTTTACATGTGCAGCAAAAGGATTAAATCAGAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAATCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTAAATTTTAAAAAGAAAAAACCCCAAAACTTACGTTTCAGGGCTTTTCACGAATTTGATGGCGTCAATTGAACTGATAAAACAAATAATTGTTTTTTAAAGTTAATTTCAATTCAAAAAATAACAGTGTACACAATAGTGTACAAATTATTTGTTACTAGGGCATTTCTCTGAGTTTAGTTGTCATGCTGGGTGACGAACTCAGGAGTTAAAAACACTCCTTTTAGTGGATCGGATTATGAGGCTCGTTATTTGGCTTCAATAAATTTATTGAGCGCAAAACCATATTTGGTGATTGGATTTTAAATCTTGAATTAACTTAGCCGTTCAAGTGGCTGATTAAGTAGCTTGGTCGCATTTTAGTGTGAGCAAGTTATAAAAATCACGAAATACTTTCGATTGCAGATACGTGCATCCAGTCGCGTGTACATTGCCGAAGTTGAGGATTTAGATGGTGGGGGGTATCCCTATGTTCAGGTTATTTGCAGAAGTAAACCGC # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-53] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //