Array 1 853832-855994 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024970.1 Erwinia amylovora strain E-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 853832 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 853893 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 853954 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 854015 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 854076 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 854137 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 854198 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 854259 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 854320 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 854381 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 854442 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 854503 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 854564 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 854625 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 854686 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 854747 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 854808 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 854869 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 854930 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 854991 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 855052 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 855113 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 855174 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 855235 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 855296 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 855357 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 855418 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 855479 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 855540 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 855601 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 855662 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 855723 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 855784 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 855845 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 855906 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 855967 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 866902-869007 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024970.1 Erwinia amylovora strain E-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 866902 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 866963 29 100.0 32 ............................. GAGATGCACTGGATATACAGACTCCTCACTGA 867024 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 867085 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 867146 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 867207 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 867268 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 867330 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 867391 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 867452 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 867513 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 867574 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 867635 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 867696 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 867757 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 867818 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 867879 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 867940 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 868001 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 868063 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 868124 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 868185 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 868246 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 868307 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 868368 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 868430 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 868491 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 868552 29 100.0 31 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGA 868613 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 868674 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 868735 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 868796 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 868857 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 868918 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 868979 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 878471-878799 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024970.1 Erwinia amylovora strain E-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 878471 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 878531 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 878591 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 878651 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 878711 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 878772 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //