Array 1 267727-269280 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCXY01000005.1 Streptococcus agalactiae strain 325662 ctg7180000003473, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 267727 36 100.0 30 .................................... CATACAAGGACTACCATCAACAGTCACATT 267793 36 100.0 30 .................................... TAAATAACTGTCTTGTAAAAATTTTGTCAA 267859 36 100.0 30 .................................... TCATACGCACAATGAGGCTTCAAAAGCTTC 267925 36 100.0 30 .................................... ACGTACCCAGCGATATACTACGCAGAATGG 267991 36 100.0 30 .................................... GATATGGTGGACAGGTTCAGCAGGTCATGT 268057 36 100.0 30 .................................... TATCGCAAATGAAACGGGCGCTTTTGCACT 268123 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 268189 36 100.0 30 .................................... GAAGTATACTACGGTTAGAGATTGGCTCAA 268255 36 100.0 30 .................................... TCAGGAGATTGTGTGTACTCACGAATTTTT 268321 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 268387 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 268453 36 100.0 30 .................................... GAAGTATACTACGGTTAGAGATTGGCTCAA 268519 36 100.0 30 .................................... GAAACTTCGATTAGTTTGCGTACTCGCTCA 268585 36 100.0 30 .................................... ACAAACCTCTAATGGATAATATAGAACAAA 268651 36 100.0 30 .................................... ACACAATTAAACATAAAGAAGTGCTTATTT 268717 36 100.0 30 .................................... TCAGGAGATTGTGTGTACTCACGAATTTTT 268783 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 268849 36 100.0 30 .................................... AACCTTGATAGGCGTACTGTATGGATTCCA 268915 36 100.0 30 .................................... CTACTGTATTATCTGAAATAGTATCGTTTT 268981 36 100.0 30 .................................... TCTCGGGAAATGCAACTGATGCTGCAATCA 269047 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 269113 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 269179 36 100.0 30 .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 269245 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CGATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 37607-38564 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCXY01000004.1 Streptococcus agalactiae strain 325662 ctg7180000003472, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 37607 32 100.0 33 ................................ AATTTTAGATATGATAAAGGCGTTGTATCTTTA 37672 32 100.0 36 ................................ AAAGATTTTTTTGTTGTGGTAACTTCTTCCGCTAAT 37740 32 100.0 34 ................................ AGGTATTAAAGAATTGGGCGGTGACCCATTCAAA 37806 32 100.0 33 ................................ AATATATTTTGGCTGTGTTCTTGCGTAATAATT 37871 32 100.0 33 ................................ CTTTCTTTGTAGCTCCTTCTATTATACCATTTT 37936 32 100.0 33 ................................ AATTTCATCTGTTAGGCTCCTTTTTCGCTTTTG 38001 32 100.0 35 ................................ AATCATAAGCTATCTCAACGCAATCTTTAAGTCGT 38068 32 100.0 34 ................................ AATAAAGTCTGCAAATGTAAAACTTTTTAGAAGT 38134 32 100.0 34 ................................ TTACTGTATTAACTTCTGTACCGTCTGAAAATTG 38200 32 100.0 36 ................................ ATTCAATGAATTTAGGTTCGTGGGATATAGAAAATC 38268 32 100.0 34 ................................ TATTTTATATTAAAAATAAGACTACCATAATTAT 38334 32 100.0 36 ................................ ATGTTACCTCCTTTTAAAAAGGTCTATCCTTGCCCC 38402 32 100.0 35 ................................ AAAAGATTATTGCCTTTTTTAATAACACGGCTAAA 38469 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 38534 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 98.5 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : TATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTGAGGAACAGTGCATTTTATGGCGCCCTACGCCCTGTCTTATTTACAATATCTATTTGATGCGACTATAACTCATGCTAGTGGGACTGCGACTTTTCCAAAAGGTCAAAGCGATAGTCAATCCAAACTACTCTTGCAATTATCAAATGGGGTCCTCGTAGATATCTTCTTGACAACACGTTTAAATTTACCGCATGAAATGATTATTTATGGAACTGAAGGTCGTCTAATCATTCCACATTTTTGGAAAACCACTCATGCAAAATTGGTGAGAAATGATACTAGTGCGCAAACGATTCAAGTTGACATGGTTAGTGATTTTGAGAAAGAAGCTTATCATGTTAGTCAAATGAT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //