Array 1 849364-848555 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077421.1 Pectobacterium polaris strain QK413-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 849363 28 96.4 32 .........T.................. GATAGTCTTTTGCAGCGCTAGCTTTGCACCGC 849303 28 96.4 32 .........T.................. ATATCGGCCCCAGCTTCGGCATACCAGGTTTT 849243 28 96.4 32 .........T.................. AGTTCTGGATTGATTTCTGCTAAAGAAACCTT 849183 28 96.4 32 .........T.................. ACTATTTCGATAAAGAACGCCCCTGACATCAT 849123 28 100.0 32 ............................ AGAATGCATAACCACCATTTGCACGGGCCTCT 849063 28 100.0 33 ............................ CATTAATGCCCTGTCTAAATCGATGGTGCAGGG 849002 28 100.0 33 ............................ ATTGAACCGTCAAGCGGGTATGCTCAGCTTAGG 848941 28 96.4 32 .............T.............. TGCATTAATGGCAATGCAAGCAGCTGCCGTGG 848881 28 92.9 32 ..........A..T.............. ATAACGCACGTATTTTTTTAGACTGTGCATCA 848821 28 96.4 32 .............T.............. TTTGGCATTCTGTGTGTAATCCGACTGAAGCT 848761 28 100.0 32 ............................ TTTGGCATTCTGTGTGTAATCCGACTGAAGCT 848701 28 100.0 32 ............................ TTTAGGCAAAAAGCTCAGAGTAGACATGATCT 848641 28 89.3 32 ...T.........T...T.......... CATGCGCCTTGATTCAACGCCGCTTTTTGTGG 848581 27 82.1 0 ...........TG.........-...TG | ========== ====== ====== ====== ============================ ================================= ================== 14 28 95.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AATCTCCCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAAAAATGAATGCCAATTGGGTTTAACCGGACGCAGCATGATGGTATCCCCCTCACGCACGATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGTGGCAAGCGAATGGCACGGTTGTTACCATTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTCATATAAAATTCAGCCAGCCACTTACCATTTATTATTGCTGGCTAAAACATAAGCTAAGTATAGGTATTAATCACTCGATTGTATATTCATAGCATATGCAGATACCTAGCATAGGCCTATCGACATACGTTCATGACCCTTTTTTTACGCACCACCGTAACTCATTGATTTTTAATTTCGATTATCGACTCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : CTTATCAGAATGCGTCGCTGGCGCGACGCATTTCGGGAACTATTCCCCGTTGAGCGTGACAACCAGTGAGCGGCTGCCGCCGTGGTTACGATGTTCGCACAGGTAGATGCCTTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATATCGTCGCTACCTTCATAAGTATGACGGTAGTACGGTTCATTCTCCGGCACTAACCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACGTGCATCAGCCCAACGTTTATCTGGCGCAGAGCGATAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCTGCTTCAGGCGGATTTCATATTGTGCCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGTC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 850783-850334 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077421.1 Pectobacterium polaris strain QK413-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 850782 28 100.0 32 ............................ AACCAAAGTCCATACCGTCGATTACCATGTAA 850722 28 100.0 32 ............................ TGACCCCGCAGATAGAATCGCCACCCGTTGTT 850662 28 100.0 32 ............................ GCCTTGATTGACGAAGGTGTTGTGTTGGGCAA 850602 28 100.0 32 ............................ ATCACAATCAAATAAATGAGCGGCATCATTAA 850542 28 89.3 32 .........T..A....C.......... TTCTCAATCCCACCCGGCCGCAAGCGGCCTCC 850482 28 96.4 32 .................C.......... TCTGTCCGACGCAGCAGGGGCTACAGCCGCAT 850422 28 92.9 32 ............A....C.......... TCATCAATAGCGCGATTTGCTCTTGCAATTGC 850362 28 85.7 0 ............AC...C......A... | C [850337] ========== ====== ====== ====== ============================ ================================ ================== 8 28 95.5 32 GTTCACTGCCGTGTAGGTAGCTTAGAAA # Left flank : GAGGCACTCTCTACGTTGGAGCAAGCGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAGTGTAAAGCCGTACCTGACAGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCTGAACGATTGCGCCGACGCTCAGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGATGGAAAAACGTAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGCCAGATGTTTTTCGTGTTTGTGGAACATGGTCCGCTACAGGACGCCCCCGTCGTTGGCCGTTTCTCTTCCTACGGTTTAAGCGCGGAAGCTACCGTTCCCTGGTTCTAACCCTTTTCTGGCGACCGGCTGCAAGCTATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTCGAGAAAAAATCCATATTCTCTTTAACAATCTAGTGGTTAGATTAAAAACCTAACC # Right flank : TATCAGGACTTGCACTTCGCCAGACATCATCCGGTCAGACTGACCGATTAGTTAACCCAATCTTCCAACGTTAGTCCTTGTACTCGCTCAAACTCTCTCAGGTTATTGGTAACCAATATGGCCTTAACGCTGATGGCATGACCAGCGATGGCCGTATCATTTGGGCCAATAGGCGTGCCTGCGGCGGCTAACGCAATTTTGATTTTCGTAGTGGCGTCTACTGCTGCGCTATCCCAAGGTAACACCGCATCGAGCCGACGACAGAAAGCATCAACTAGTTGCATATGGCGTGGCGAAGCTTTTTTTCCAACCGCCCCGAAACGCATTTCAGCGTAAGTGATAGCAGAGACCACGATCCGATCACGCCGCAATGTGCACTGCTGTAGCTTGTCAATCATCGCTGTCGGGTGTTCACGCATAATGAAGGAACAGATATTGGTATCCAGCATGAACAAGCGACTCACAGTTCGAATCTCCCCTCTTCGACTACATCCTGACGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 859729-861019 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077421.1 Pectobacterium polaris strain QK413-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 859729 28 100.0 32 ............................ GTCATGGCGTAGATAATAAATATTCCCGGTTT 859789 28 100.0 32 ............................ GCGTGCCCGCGCTTGCCGGTCGCTCACCTGAC 859849 28 100.0 32 ............................ GGTCAAACCACCAAACACTGTCGGGTCGGCGA 859909 28 100.0 32 ............................ TATTTTAAACAAGCCCGAGTGGGCGAAGTGAT 859969 28 100.0 33 ............................ ATCCAAAATCAAATCCCACGTGCCGGTGTCTAA 860030 28 100.0 32 ............................ GAAAAGACGAGGTCATCCCGCTGCAAAGAAAA 860090 28 100.0 32 ............................ GTGCTGGGCGTTGAGGTTAGGCAACTGCGACA 860150 28 100.0 32 ............................ ATCATCAGCGATCCACGACGACAAGCAGCCTT 860210 28 100.0 32 ............................ TGTGATTCCGCCTTCTTACTCTCAGCATTGCT 860270 28 100.0 32 ............................ GATGAGCAACGCAAGCTAGCTGAAGCCGCCCA 860330 28 100.0 32 ............................ GGGCTGTCCGTTGCCGATGGCCTGCGCACCTG 860390 28 100.0 32 ............................ AATAAGGCAGCACGCAGACCTGATAAGAATGG 860450 28 100.0 32 ............................ ACAACGAATAGCTCTCCGCTAGAGAAATCAAT 860510 28 100.0 32 ............................ ATACGTCGAACTCAGTGGCAGGTTCCAGTAGT 860570 28 100.0 33 ............................ TTTGGTTGAAGGTCGCCGGAGTAGTGACGATAT 860631 28 100.0 33 ............................ TAGCGCCAATTTAGAATCACTGTTCGCTTTTAT 860692 28 100.0 32 ............................ GAACACCAAAAAATCGAGTACAAACGCGTTGG 860752 28 100.0 32 ............................ TGCACCTTCATTTGGAGCTGGGCATTCAGGGA 860812 28 100.0 32 ............................ AGGGGAAGAAGTGGAATTTGTACTCTTTCGGG 860872 28 100.0 32 ............................ CATCCGCTGCCAAGTGCTTTAGATACCTGACC 860932 28 92.9 32 ...........T.C.............. TTAACGGTATTTATGCGGATCGAGATAAATTT 860992 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.7 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : TGGGTGACGGAGGTGCCGGTTCCCAGCATGACAACACTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGCTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGTAATCGATAATAGCTGTGACGCCAGCGAAATAAAGCGCAGGCTAACTATTTGATAAGAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGCCGAGCTGAAAAAAAGGGTTTTTGCGACGAAAACGGCAATTGCCGCTAATAAAACAAATCGTTAGAGTGAGCGGGCAACG # Right flank : ACGGATTTAAGCGCTATTGTCTGTCTATTATCGAGGTAGCGCAGCGCTAGCGCCCAACCCTTAAATAACGCATATTGATGACCTTCTTTCGTAACGTTTTTAAGTAACGAGTTTCTTTTTAAGGGAATGAAAAGTTGTTGATTTGGCATTATTGACATTTAAAAATCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAGATACGATCCCGTTTTAAAAACGTTTGTGGATGATGACTATCGGTTAGAGGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAAACGTTATGCACACCAAACCCTAATGAATCTTGGAAAACGGCAATATTTGGCTGTACCGACCCCATCTCATCGTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4479832-4478827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077421.1 Pectobacterium polaris strain QK413-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4479831 29 100.0 32 ............................. AAATGGGCTGTAAATGGGCACCGAAAAAACAG 4479770 29 100.0 32 ............................. GTCGATGATAATGGCAACCGATGCGAATATTT 4479709 29 100.0 32 ............................. TTACCTGCATTCACACCGCATTTTTACGTTAT 4479648 29 100.0 32 ............................. CGGCAGCGCTTATCGGGATAGATGAGGATACG 4479587 29 100.0 32 ............................. GAGCTTCAGGTTGGTGATTCTCGCTGGCATGC 4479526 29 100.0 32 ............................. TGCTGGGCGTGGACGTTGTAACCAATACCGGG 4479465 29 100.0 32 ............................. GTGATCGGTTTTTTGACGCCGAAATCGCAACA 4479404 29 100.0 32 ............................. GAGAATTCCTCTCTCTATCGCAATTACGTGAC 4479343 29 100.0 32 ............................. GCTTGCAGGATGGTACAGGCGTTTTGTATTCA 4479282 29 93.1 32 .T..........T................ AAATGCCAACCGCAGAGCGTGAGCGGATTGTT 4479221 29 96.6 32 .T........................... AAACCGCCAGTCGCCAGGGCGGTGGCGATCTA 4479160 29 100.0 32 ............................. GATTTTGTAGCGGAAATATTGACGACTCGCTG 4479099 29 100.0 32 ............................. CCCACCAGTCCCATCGATCCATGCTTCGGTAT 4479038 29 93.1 32 .T...........G............... TATTTCAAGACTGACGCTTACTTTGCACAGAA 4478977 29 89.7 32 .T......T...T................ GCACTCTGGATGCTGAACTAACCGAAACGCTC 4478916 29 93.1 32 .T...........T............... CAAGCGGGCGTTCGCGCACCTGGCGTCAAGAC 4478855 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGCATTCTCTGCTAATTATTTACTGTGTTACTTCAATACGAGGGATGTGCATTGATTGCTTCCAATTTATTTCAATATGCTTGTAATCATTAGATATAGTGGATGGAAAACCTTGGTATTTAAAAGATATATTGAAATTCGGTTGAGAAAGAATATTTTTAACAGAGAAGTTCTTTACCTAGAAATAGAATCATAGTGGTATAACTTTTGCAAAAGTGTACAGCGTTTAATTCAGCGACTGAGCGTTTTCCTGCTGTCTGAAATCAAACTGGCAAATTAGGGAAACGTAGTGATGGTGTGGGCGGCGAATGTGGAATTCGGTTTTGGGCTCCAAATCTGGGGCGAAAACCGCCGAATGCTGGTAGATTTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAATAACATGGAAAAATCGGTAGAATTTTTTATTCCGAAAAAAGTGTTATAAAACAACGCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCCGCACGCGTCAAATCCCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACCCACCGTTACGGTGAGGCGCTATGCCAATGATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCCGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAAGTAGGCAGCGGTGCTGTTCCTGTTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCAGCCGAGCTGTATGAAACGGTTGAAGGACTTGTCAGCAGTGGGCGGTTGGGACGTGAAGAAGGTTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGGGGAAGTATTCCGCCTTCCAATGTGTTCCAGCCGATTAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4483389-4482078 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077421.1 Pectobacterium polaris strain QK413-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4483388 29 100.0 32 ............................. CTGACCGTAGCAGGTATCGTCCCGACAGTAGA 4483327 29 100.0 32 ............................. TTACGCAGGCTGTAAGATTTCCCCGCACCCGA 4483266 29 100.0 32 ............................. CGCTTTCCGACAGGATGGCCCAAATCGGCTTA 4483205 29 100.0 32 ............................. TCTCTTGCGGGGTGCGGTGTAGCCCTTTAGGC 4483144 29 100.0 32 ............................. TCGCTCCGACTGGTCTGCTTTTGACGTGTTAA 4483083 29 100.0 32 ............................. AGCGATACGTTGACATTCCAGTGCCTCATCAT 4483022 29 100.0 32 ............................. TGCGGTAACGTGCTTCCGGCGAACACTAAAGA 4482961 29 100.0 32 ............................. CCATGAAATTAGCAGGTACGACGCCGACGCAG 4482900 29 100.0 32 ............................. CATCTGTTATCGCGCTGTCGATATCCTCACCG 4482839 29 100.0 32 ............................. CGTGATAATGATGACTATTTCAATTCAAGATG 4482778 29 100.0 32 ............................. CCAGATATCTTTGAAGCAACTTACGAGCGGGT 4482717 29 100.0 32 ............................. AGCTGAATAAATCAATTATCGGCGTAAAAAAA 4482656 29 100.0 32 ............................. AAACCTGCTCATCCATCGCGTTTGTTAGCACG 4482595 29 100.0 32 ............................. CAGGATAATGTAGATATAAAGCGAGTTTAAAG 4482534 29 96.6 32 C............................ TTGCTCTCTACAACCAATGGGGAATGATTATT 4482473 29 100.0 33 ............................. GGTCGCCGAACCGGCATTACTTATGCCTGGGGG 4482411 29 96.6 32 .G........................... TTTCATGCCGATGCCGTTGAACTCTGTGTTGA 4482350 29 100.0 32 ............................. CGATACCTGTCAACTTAGCCATTGTTTTAGCA 4482289 29 100.0 32 ............................. AAACTCTTCAGTTACGCAGTAGACGAATCGCT 4482228 29 100.0 32 ............................. GGCGCATATTTCTTAGTGGGTTCTCGCCTTTC 4482167 29 100.0 32 ............................. CGCGTCCCGGGAGCACCATTTCTGATTTTGAC 4482106 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCGGCGATCCCAGAACCGAAACCATTTGGTGACAGCGGTCACCGAGGACAAGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCAGTGTGGTTGCTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : TTCAATGAACTGCTGGCGTTGCTGGGGATAAACTGATGTGAAATGTAAATTACACATGTTTCCATATTGTCAACTCGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGTGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGAGAGGGACAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //